| MirGeneDB ID | Bla-Mir-2070-P2 |
|---|
| Family name |
MIR-2070 (all species) |
|---|
| Seed |
UUCCACA |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Bla-Mir-2070-P1
|
|---|
| Orthologues |
Bfl-Mir-2070
|
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| Node of Origin (locus) |
B. lanceolatum
|
|---|
| Node of Origin (family) |
Branchiostoma
|
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Genome context
(BraLan2) |
Sc0000079: 1015147-1015208 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCUCUCGGAGAUGGUCGGGUGUGACGGGUCUUUCCACAGCCUCUACACAUGUGAGCCUUUCUUAAAGCGCAUGUGCAUAAGCUGUGGGAGCACUCUGUACACCAUUAUACAACAACUGCAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCUCUCGGAGAUGGUCG--| AC C CUCUA GAGCCUU
GGUGUG GGGU UUUCCACAGC CACAUGU U
CCACAU CUCA GAGGGUGUCG GUGUACG C
CGACGUCAACAACAUAUUA^ GU C AAUAC CGAAAUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Bla-Mir-2070-P2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUUCCACAGCCUCUACACAUGU -22
Get sequence
|
|---|
| Star sequence |
Bla-Mir-2070-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- AUGUGCAUAAGCUGUGGGAGCA -62
Get sequence
|
|---|
