| MirGeneDB ID | Bfl-Mir-2056 |
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| Family name |
MIR-2056 (all species) |
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| Seed |
UUCACUG |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
bfl-mir-2056
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| Paralogues |
|
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| Orthologues |
Bla-Mir-2056-P1
Bla-Mir-2056-P2
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Branchiostoma
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049979.1: 20104446-20104505 [+]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
GGAGACCCCGGCCUACAGACGACUUGGGCUCAGGUAUGUCUGCGGUGAGGCUGGUACAACUCGGCAGGUUUCACUGUAGAUCUACCUGCGCUCACGGCGUCAACAUCCAACUUCUACUUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGAGACCCCGGCCUACA--| A - U U GGUACA
GACG CU UGGGC CAGGUA GUCUGCGGUGAGGCU A
CUGC GG ACUCG GUCCAU UAGAUGUCACUUUGG C
CUUCAUCUUCAACCUACAA^ - C C C ACGGCU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Bfl-Mir-2056_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- CAGGUAUGUCUGCGGUGAGGCU -22
Get sequence
|
|---|
| Mature sequence |
Bfl-Mir-2056_3p |
| mirBase accession | MIMAT0009982 |
|---|
| Sequence |
38- UUUCACUGUAGAUCUACCUGCG -60
Get sequence
|
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