MirGeneDB 2.1

MirGeneDB ID

Bfl-Let-7-P4

Family name LET-7 (all species)
Seed GAGGUAG
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-let-7a-2
Paralogues Bfl-Let-7-P3 
Orthologues Aae-Let-7  Bge-Let-7  Bla-Let-7-P4  Bpl-Let-7  Cgi-Let-7  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Hme-Let-7  Isc-Let-7  Lan-Let-7  Lgi-Let-7  Npo-Let-7  Obi-Let-7  Ovu-Let-7  Pfl-Let-7  Pmi-Let-7  Sko-Let-7  Spu-Let-7  Tca-Let-7  Xbo-Let-7 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049979.1: 15365859-15365925 [+] UCSC
Clustered miRNAs
(< 50kb from Let-7-P4)
Mir-10-P2-v1 NC_049979.1: 15363827-15363883 [+] UCSC
Mir-10-P2-v2 NC_049979.1: 15363828-15363882 [+] UCSC
Let-7-P3 NC_049979.1: 15364081-15364147 [+] UCSC
Mir-10-P3 NC_049979.1: 15365561-15365616 [+] UCSC
Let-7-P4 NC_049979.1: 15365859-15365925 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GCUGGACACCAGACACGGGUGCACCUGAGGUGAGGUAGUAGGUUGUAUAGUUGAGAAGUACAUCAUUGGAGAUAACUGUGCAACCUGCUAGCUCUCCUUGGGGCAUGCCAGUUGCAGCACACCUUCC
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Structure
        10         20          30        40        50        60   
GCUGGACACCAGACACG-   --| A  UG   U   G                 GAGAAGUACA 
                  GGU  GC CC  AGG GAG UAGUAGGUUGUAUAGUU          \
                  CCG  CG GG  UCC CUC AUCGUCCAACGUGUCAA          U
CCUUCCACACGACGUUGA   UA^ -  GU   U   G                 UAGAGGUUAC 
     120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Bfl-Let-7-P4_5p

mirBase accessionMIMAT0009462
Sequence
0- UGAGGUAGUAGGUUGUAUAGUU -22
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Star sequence

Bfl-Let-7-P4_3p*

mirBase accessionNone
Sequence
45- CUGUGCAACCUGCUAGCUCUCC -67
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