MirGeneDB ID | Bfl-Mir-10-P2 |
Family name |
MIR-10 (all species) |
Species |
Florida lancelet (Branchiostoma floridae) |
MiRBase ID |
bfl-mir-100
|
Paralogues |
Bfl-Mir-10-P1-v1
Bfl-Mir-10-P2-v1
Bfl-Mir-10-P3
Bfl-Mir-10-P9
Bfl-Mir-10-P10
|
Orthologues |
Aae-Mir-10-P2
Aca-Mir-10-P2b
Aca-Mir-10-P2c
Aca-Mir-10-P2d
Adi-Mir-10
Aga-Mir-10-P2
Agr-Mir-10-P2
Ami-Mir-10-P2b
Ami-Mir-10-P2c
Ami-Mir-10-P2d
Asp-Mir-10
Asu-Mir-10-P2o3
Asu-Mir-10-P2o4
Asu-Mir-10-P2o5
Asu-Mir-10-P2o6
Asu-Mir-10-P2o7
Asu-Mir-10-P2o8
Bge-Mir-10-P2
Bko-Mir-10-P2
Bla-Mir-10-P2-v1
Bpl-Mir-10-P2
Bta-Mir-10-P2b
Bta-Mir-10-P2c
Bta-Mir-10-P2d
Cbr-Mir-10-P2
Cel-Mir-10-P2
Cfa-Mir-10-P2b
Cfa-Mir-10-P2c
Cfa-Mir-10-P2d
Cin-Mir-10-P2
Cja-Mir-10-P2b
Cja-Mir-10-P2c
Cja-Mir-10-P2d
Cli-Mir-10-P2c
Cli-Mir-10-P2d
Cmi-Mir-10-P2c
Cmi-Mir-10-P2d
Cpi-Mir-10-P2b
Cpi-Mir-10-P2c
Cpi-Mir-10-P2d
Cpo-Mir-10-P2b
Cpo-Mir-10-P2c
Cpo-Mir-10-P2d
Csc-Mir-10-P2r1
Csc-Mir-10-P2r2
Cte-Mir-10-P2
Dan-Mir-10-P2
Dgr-Mir-10-P2
Dlo-Mir-10-P2
Dma-Mir-10-P2
Dme-Mir-10-P2
Dmo-Mir-10-P2
Dno-Mir-10-P2c
Dno-Mir-10-P2d
Dpu-Mir-10-P2
Dre-Mir-10-P2c1
Dre-Mir-10-P2c2
Dre-Mir-10-P2d1
Dre-Mir-10-P2d2
Dsi-Mir-10-P2
Dya-Mir-10-P2
Eba-Mir-10-P2
Ebu-Mir-10-P2e
Ebu-Mir-10-P2f
Eca-Mir-10-P2b
Eca-Mir-10-P2c
Eca-Mir-10-P2d
Efe-Mir-10-P2g
Efe-Mir-10-P2h
Efe-Mir-10-P2i
Efe-Mir-10-P2j
Efe-Mir-10-P2k
Ete-Mir-10-P2b
Ete-Mir-10-P2c
Ete-Mir-10-P2d
Gga-Mir-10-P2c
Gga-Mir-10-P2d
Gja-Mir-10-P2b
Gja-Mir-10-P2c
Gja-Mir-10-P2d
Gmo-Mir-10-P2c2
Gmo-Mir-10-P2d1
Gmo-Mir-10-P2d2
Gpa-Mir-10-P2
Gsp-Mir-10-P2
Hru-Mir-10-P2
Hsa-Mir-10-P2b
Hsa-Mir-10-P2c
Hsa-Mir-10-P2d
Isc-Mir-10-P2
Laf-Mir-10-P2b
Laf-Mir-10-P2c
Laf-Mir-10-P2d
Lan-Mir-10-P2
Lch-Mir-10-P2b
Lch-Mir-10-P2c
Lch-Mir-10-P2d
Lgi-Mir-10-P2
Lhy-Mir-10-P2
Llo-Mir-10-P2
Loc-Mir-10-P2c
Loc-Mir-10-P2d
Lpo-Mir-10-P2o
Lpo-Mir-10-P2p
Lpo-Mir-10-P2q
Mal-Mir-10-P2c2
Mal-Mir-10-P2d1
Mal-Mir-10-P2d2
Mdo-Mir-10-P2d
Mgi-Mir-10-P2
Mml-Mir-10-P2b
Mml-Mir-10-P2c
Mml-Mir-10-P2d
Mmr-Mir-10-P2b
Mmr-Mir-10-P2c
Mmr-Mir-10-P2d
Mmu-Mir-10-P2b
Mmu-Mir-10-P2c
Mmu-Mir-10-P2d
Mom-Mir-10-P2
Mun-Mir-10-P2b
Mun-Mir-10-P2c
Mun-Mir-10-P2d
Neu-Mir-10-P2b
Neu-Mir-10-P2c
Neu-Mir-10-P2d
Npo-Mir-10-P2
Nve-Mir-10
Oan-Mir-10-P2b
Oan-Mir-10-P2c
Oan-Mir-10-P2d
Obi-Mir-10-P2
Ocu-Mir-10-P2b
Ocu-Mir-10-P2c
Ocu-Mir-10-P2d
Ofu-Mir-10-P2
Ovu-Mir-10-P2
Pab-Mir-10-P2b
Pab-Mir-10-P2c
Pab-Mir-10-P2d
Pau-Mir-10-P2
Pbv-Mir-10-P2b
Pbv-Mir-10-P2c
Pbv-Mir-10-P2d
Pca-Mir-10-P2
Pdu-Mir-10-P2
Pfl-Mir-10-P2
Ple-Mir-10-P2
Pma-Mir-10-P2o1
Pma-Mir-10-P2o2
Pmi-Mir-10-P2
Pve-Mir-10-P2
Rno-Mir-10-P2b
Rno-Mir-10-P2c
Rno-Mir-10-P2d
Rph-Mir-10-P2
Sha-Mir-10-P2b
Sha-Mir-10-P2c
Sha-Mir-10-P2d
Sko-Mir-10-P2
Snu-Mir-10-P2
Spt-Mir-10-P2b
Spt-Mir-10-P2c
Spt-Mir-10-P2d
Spu-Mir-10-P2m
Spu-Mir-10-P2n
Sto-Mir-10-P2b
Sto-Mir-10-P2c
Sto-Mir-10-P2d
Tca-Mir-10-P2
Tgu-Mir-10-P2c
Tgu-Mir-10-P2d
Tni-Mir-10-P2d1
Tni-Mir-10-P2d2
Tur-Mir-10-P2
War-Mir-10-P2s
War-Mir-10-P2t
Xbo-Mir-10-P2
Xbo-Mir-10-P2-as
Xla-Mir-10-P2b1
Xla-Mir-10-P2b2
Xla-Mir-10-P2c3
Xla-Mir-10-P2c4
Xtr-Mir-10-P2b
Xtr-Mir-10-P2c
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Eumetazoa
|
Genome context (GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049979.1: 15363828-15363882 [+]
UCSC
|
Clustered miRNAs (< 50kb from Mir-10-P2-v2) |
Mir-10-P2-v1
NC_049979.1: 15363827-15363883 [+]
UCSC
Mir-10-P2-v2
NC_049979.1: 15363828-15363882 [+]
UCSC
Let-7-P3
NC_049979.1: 15364081-15364147 [+]
UCSC
Mir-10-P3
NC_049979.1: 15365561-15365616 [+]
UCSC
Let-7-P4
NC_049979.1: 15365859-15365925 [+]
UCSC
|
Variant | Bfl-Mir-10-P2-v2 |
Seed |
CCCGUAG |
Precursor (pre-Mir +30nt flank) |
CCUGUCCUCAGAUAAAGCCGGCUGCCAUAAACCCGUAGAUCCGAACUUGUGUUGCUUCAGUUCACAAGCUCGUGUCUAUGGGUCUAUGUCAUCAGGGCAACAUCUGCACGUGCAG
Get precursor sequence
|
Structure | 10 20 30 40 50
CCUGUCCUCAGAUAAAG--| GGC C A UC A UUGCU
CC UG CAUA ACCCGUAGA CGA CUUGUG \
GG AC GUAU UGGGUAUCU GCU GAACAC U
GACGUGCACGUCUACAACG^ ACU U C GU C UUGAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Bfl-Mir-10-P2-v2_5p |
mirBase accession | MIMAT0009481 |
Sequence |
0- ACCCGUAGAUCCGAACUUGUGU -22
Get sequence
|
Star sequence |
Bfl-Mir-10-P2-v2_3p* |
mirBase accession | MIMAT0019145 |
Sequence |
34- CAAGCUCGUGUCUAUGGGUCU -55
Get sequence
|
Variant | Bfl-Mir-10-P2-v1 |
Seed |
ACCCGUA |
Precursor (pre-Mir +30nt flank) |
UCCUGUCCUCAGAUAAAGCCGGCUGCCAUAAACCCGUAGAUCCGAACUUGUGUUGCUUCAGUUCACAAGCUCGUGUCUAUGGGUCUAUGUCAUCAGGGCAACAUCUGCACGUGCAGU
Get precursor sequence
|
Structure | 10 20 30 40 50
UCCUGUCCUCAGAUAAA- GGC-| C A UC A UUGCU
GCC UG CAUA ACCCGUAGA CGA CUUGUG \
CGG AC GUAU UGGGUAUCU GCU GAACAC U
UGACGUGCACGUCUACAA GACU^ U C GU C UUGAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Bfl-Mir-10-P2-v1_5p |
mirBase accession | MIMAT0009481 |
Sequence |
0- AACCCGUAGAUCCGAACUUGUGU -23
Get sequence
|
Star sequence |
Bfl-Mir-10-P2-v1_3p* |
mirBase accession | MIMAT0019145 |
Sequence |
35- CAAGCUCGUGUCUAUGGGUCUA -57
Get sequence
|