Mir-10-P2m

MirGeneDB ID

Spu-Mir-10-P2m

Family name

MIR-10 (all species)

Species

Purple sea urchin (Strongylocentrotus purpuratus)

MiRBase ID

spu-mir-2003

Paralogues

Spu-Mir-10-P1 Spu-Mir-10-P2n Spu-Mir-10-P3

Orthologues

Aae-Mir-10-P2 Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Asp-Mir-10 Bfl-Mir-10-P2-v1 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bpl-Mir-10-P2 Cbr-Mir-10-P2 Cel-Mir-10-P2 Cin-Mir-10-P2 Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dpu-Mir-10-P2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Isc-Mir-10-P2 Lan-Mir-10-P2 Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Mgi-Mir-10-P2 Mom-Mir-10-P2 Npo-Mir-10-P2 Nve-Mir-10 Obi-Mir-10-P2 Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pau-Mir-10-P2 Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rph-Mir-10-P2 Sko-Mir-10-P2 Snu-Mir-10-P2 Tca-Mir-10-P2 Tur-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Node of Origin (locus)

S. purpuratus

Node of Origin (family)

Eumetazoa

Genome context
(Spur_5.0)

AAGJ06000001.1: 27024190-27024252 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P2m)

Mir-10-P2m AAGJ06000001.1: 27024190-27024252 [+] Ensembl
Mir-10-P2n AAGJ06000001.1: 27027636-27027697 [+] Ensembl
Let-7 AAGJ06000001.1: 27043769-27043836 [+] Ensembl
Mir-10-P3 AAGJ06000001.1: 27044734-27044796 [+] Ensembl

Seed

ACCCGUA

Precursor
(pre-Mir +30nt flank)

ACCUUAGCAGACCUGUUGCUGGUUGGCCUAAACCCGUAAGGUCUUAACUUGUGCUGGAGUUACAAGUACACAGGUUAUGCCCUUUGGGUAGUAGGCCGGACAGAAUACUCAUCGGCGAUAAAA

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Structure

        10          20        30         40        50        60 
ACCUUAGCAGACCUGUUG--   GU       A-|    U    UCU         CUGGAGU 
                    CUG  UGGCCUA  ACCCG AAGG   UAACUUGUG       \
                    GAC  GCCGGAU  UGGGU UUCC   AUUGGACAC       U
AAAAUAGCGGCUACUCAUAA   AG       GA^    -    CGU         AUGAACA 
 120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

32	Bl	Eg	Ga	Ov	Pl	To	To

Mature sequence

Spu-Mir-10-P2m_5p

mirBase accession

MIMAT0009744

Sequence

0- AACCCGUAAGGUCUUAACUUGUG -23

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Star sequence

Spu-Mir-10-P2m_3p*

mirBase accession

MIMAT0019166

Sequence

40- CAGGUUAUGCCCUUUGGGUAGUA -63

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