MirGeneDB 2.1

MirGeneDB ID

Spu-Mir-10-P2m

Family name MIR-10 (all species)
Seed ACCCGUA
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID spu-mir-2003
Paralogues Spu-Mir-10-P1  Spu-Mir-10-P2n  Spu-Mir-10-P3 
Orthologues Aae-Mir-10-P2  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cgi-Mir-10-P2  Cin-Mir-10-P2  Cte-Mir-10-P2  Dan-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dpu-Mir-10-P2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Isc-Mir-10-P2  Lan-Mir-10-P2  Lgi-Mir-10-P2  Npo-Mir-10-P2  Nve-Mir-10  Obi-Mir-10-P2  Ovu-Mir-10-P2  Pfl-Mir-10-P2  Pmi-Mir-10-P2  Sko-Mir-10-P2  Tca-Mir-10-P2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as 
Node of Origin (locus) S. purpuratus
Node of Origin (family) Eumetazoa
Genome context
(Spur_5.0)
AAGJ06000001.1: 27024190-27024252 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P2m)
Mir-10-P2m AAGJ06000001.1: 27024190-27024252 [+] Ensembl
Let-7 AAGJ06000001.1: 27043769-27043836 [+] Ensembl
Mir-10-P3 AAGJ06000001.1: 27044734-27044796 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACCUUAGCAGACCUGUUGCUGGUUGGCCUAAACCCGUAAGGUCUUAACUUGUGCUGGAGUUACAAGUACACAGGUUAUGCCCUUUGGGUAGUAGGCCGGACAGAAUACUCAUCGGCGAUAAAA
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Structure
        10          20        30         40        50        60 
ACCUUAGCAGACCUGUUG--   GU       A-|    U    UCU         CUGGAGU 
                    CUG  UGGCCUA  ACCCG AAGG   UAACUUGUG       \
                    GAC  GCCGGAU  UGGGU UUCC   AUUGGACAC       U
AAAAUAGCGGCUACUCAUAA   AG       GA^    -    CGU         AUGAACA 
 120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
32 Bl Eg Ga Ov Pl To To
Mature sequence

Spu-Mir-10-P2m_5p

mirBase accessionMIMAT0009744
Sequence
0- AACCCGUAAGGUCUUAACUUGUG -23
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Star sequence

Spu-Mir-10-P2m_3p*

mirBase accessionMIMAT0019166
Sequence
40- CAGGUUAUGCCCUUUGGGUAGUA -63
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