MirGeneDB 2.1
MirGeneDB ID

Spu-Mir-10-P2n

Family name MIR-10 (all species)
Seed ACCCGUA
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID
Paralogues Spu-Mir-10-P1  Spu-Mir-10-P2m  Spu-Mir-10-P3 
Orthologues Aae-Mir-10-P2  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cgi-Mir-10-P2  Cin-Mir-10-P2  Cte-Mir-10-P2  Dan-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dpu-Mir-10-P2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Isc-Mir-10-P2  Lan-Mir-10-P2  Lgi-Mir-10-P2  Npo-Mir-10-P2  Nve-Mir-10  Obi-Mir-10-P2  Ovu-Mir-10-P2  Pfl-Mir-10-P2  Pmi-Mir-10-P2  Sko-Mir-10-P2  Tca-Mir-10-P2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as 
Node of Origin (locus) S. purpuratus
Node of Origin (family) Eumetazoa
Genome context
(Spur_5.0)		 AAGJ06000001.1: 27027636-27027697 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P2n)		 Mir-10-P2m AAGJ06000001.1: 27024190-27024252 [+] Ensembl
Let-7 AAGJ06000001.1: 27043769-27043836 [+] Ensembl
Mir-10-P3 AAGJ06000001.1: 27044734-27044796 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUGGUUUUCUGUUUUGUGACCUCGACUUGACCCGUAAGGUCUAAACCUGUGUCAAAGUUCAAAGGCCACAGGUUUUCAUCUUGGGGUACAAGUCUGGUGUCGCGUUUAUCUGCACUGCAU
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Structure
        10        20         30         40        50        60 
UUUUGGUUUUCUGUUUUGU   -  C      -|   G      CU        GUCAAAGU 
                   GAC CU GACUUG ACCC UAAGGU  AAACCUGU        \
                   CUG GG CUGAAC UGGG GUUCUA  UUUGGACA        U
UACGUCACGUCUAUUUGCG   U  U      A^   -      CU        CCGGAAAC 
120       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
-   +
32 Bl Eg Ga Ov Pl To To
Mature sequence

Spu-Mir-10-P2n_5p
mirBase accessionNone
Sequence 
0- GACCCGUAAGGUCUAAACCUGU -22
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Star sequence

Spu-Mir-10-P2n_3p* (predicted)
mirBase accessionNone
Sequence 
41- AGGUUUUCAUCUUGGGGUACA -62
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