MirGeneDB 2.1

MirGeneDB ID

Bfl-Mir-124

Family name

MIR-124 (all species)

Seed

Species

Florida lancelet (Branchiostoma floridae)

MiRBase ID

bfl-mir-124

Paralogues

Orthologues

Aae-Mir-124 Aca-Mir-124-P1-v1 Aca-Mir-124-P1-v2 Aca-Mir-124-P2-v1 Aca-Mir-124-P2-v2 Aca-Mir-124-P3-v1 Aca-Mir-124-P3-v2 Aca-Mir-124-P4-v1 Aca-Mir-124-P4-v2 Ami-Mir-124-P1-v1 Ami-Mir-124-P1-v2 Ami-Mir-124-P2-v1 Ami-Mir-124-P2-v2 Ami-Mir-124-P3-v1 Ami-Mir-124-P3-v2 Ami-Mir-124-P4-v1 Ami-Mir-124-P4-v2 Asu-Mir-124 Bge-Mir-124 Bla-Mir-124 Bta-Mir-124-P1-v1 Bta-Mir-124-P1-v2 Bta-Mir-124-P2-v1 Bta-Mir-124-P2-v2 Bta-Mir-124-P3-v1 Bta-Mir-124-P3-v2 Cbr-Mir-124-P10 Cbr-Mir-124-P11 Cbr-Mir-124-P12 Cel-Mir-124 Cfa-Mir-124-P1-v1 Cfa-Mir-124-P1-v2 Cfa-Mir-124-P2-v1 Cfa-Mir-124-P2-v2 Cfa-Mir-124-P3-v1 Cfa-Mir-124-P3-v2 Cgi-Mir-124-P28 Cgi-Mir-124-P29 Cin-Mir-124-P7 Cin-Mir-124-P8 Cli-Mir-124-P1-v1 Cli-Mir-124-P1-v2 Cli-Mir-124-P3-v1 Cli-Mir-124-P3-v2 Cmi-Mir-124-P1-v1 Cmi-Mir-124-P1-v2 Cmi-Mir-124-P2-v1 Cmi-Mir-124-P2-v2 Cmi-Mir-124-P3-v1 Cmi-Mir-124-P3-v2 Cmi-Mir-124-P4 Cpi-Mir-124-P1-v1 Cpi-Mir-124-P1-v2 Cpi-Mir-124-P2-v1 Cpi-Mir-124-P2-v2 Cpi-Mir-124-P3-v1 Cpi-Mir-124-P3-v2 Cpi-Mir-124-P4-v1 Cpi-Mir-124-P4-v2 Cpo-Mir-124-P1-v1 Cpo-Mir-124-P1-v2 Cpo-Mir-124-P2-v1 Cpo-Mir-124-P2-v2 Cpo-Mir-124-P3-v1 Cpo-Mir-124-P3-v2 Csc-Mir-124-P26 Csc-Mir-124-P27 Cte-Mir-124 Dan-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dno-Mir-124-P1-v1 Dno-Mir-124-P1-v2 Dno-Mir-124-P2-v1 Dno-Mir-124-P2-v2 Dno-Mir-124-P3-v1 Dno-Mir-124-P3-v2 Dpu-Mir-124 Dre-Mir-124-P1a-v1 Dre-Mir-124-P1a-v2 Dre-Mir-124-P1b-v1 Dre-Mir-124-P1b-v2 Dre-Mir-124-P2a-v1 Dre-Mir-124-P2a-v2 Dre-Mir-124-P3a-v1 Dre-Mir-124-P3a-v2 Dre-Mir-124-P3b-v1 Dre-Mir-124-P3b-v2 Dre-Mir-124-P4-v1 Dre-Mir-124-P4-v2 Dsi-Mir-124 Dya-Mir-124 Ebu-Mir-124-P5-v1 Ebu-Mir-124-P5-v2 Ebu-Mir-124-P6-v1 Ebu-Mir-124-P6-v2 Efe-Mir-124-P15 Efe-Mir-124-P16 Efe-Mir-124-P17 Efe-Mir-124-P18 Efe-Mir-124-P19 Esc-Mir-124 Ete-Mir-124-P1-v1 Ete-Mir-124-P1-v2 Ete-Mir-124-P2-v1 Ete-Mir-124-P2-v2 Gga-Mir-124-P1-v1 Gga-Mir-124-P1-v2 Gga-Mir-124-P2-v1 Gga-Mir-124-P2-v2 Gga-Mir-124-P3-v1 Gga-Mir-124-P3-v2 Gga-Mir-124-P4-v1 Gga-Mir-124-P4-v2 Gja-Mir-124-P1-v1 Gja-Mir-124-P1-v2 Gja-Mir-124-P2-v1 Gja-Mir-124-P2-v2 Gja-Mir-124-P3-v1 Gja-Mir-124-P3-v2 Gja-Mir-124-P4-v1 Gja-Mir-124-P4-v2 Gmo-Mir-124-P1a-v1 Gmo-Mir-124-P1a-v2 Gmo-Mir-124-P1b-v1 Gmo-Mir-124-P1b-v2 Gmo-Mir-124-P3a-v1 Gmo-Mir-124-P3a-v2 Gmo-Mir-124-P3b-v1 Gmo-Mir-124-P3b-v2 Gmo-Mir-124-P4-v1 Gmo-Mir-124-P4-v2 Hme-Mir-124 Hsa-Mir-124-P1-v1 Hsa-Mir-124-P1-v2 Hsa-Mir-124-P2-v1 Hsa-Mir-124-P2-v2 Hsa-Mir-124-P3-v1 Hsa-Mir-124-P3-v2 Isc-Mir-124 Lan-Mir-124 Lch-Mir-124-P1 Lch-Mir-124-P2 Lch-Mir-124-P3 Lch-Mir-124-P4 Lgi-Mir-124-P13 Lgi-Mir-124-P14 Loc-Mir-124-P1-v1 Loc-Mir-124-P1-v2 Loc-Mir-124-P2-v1 Loc-Mir-124-P2-v2 Loc-Mir-124-P3-v1 Loc-Mir-124-P3-v2 Loc-Mir-124-P4-v1 Loc-Mir-124-P4-v2 Lpo-Mir-124-P20 Lpo-Mir-124-P21 Lpo-Mir-124-P22 Lpo-Mir-124-P23 Lpo-Mir-124-P24 Lpo-Mir-124-P25 Mal-Mir-124-P1a-v1 Mal-Mir-124-P1a-v2 Mal-Mir-124-P1b-v1 Mal-Mir-124-P1b-v2 Mal-Mir-124-P2a-v1 Mal-Mir-124-P2a-v2 Mal-Mir-124-P3a-v1 Mal-Mir-124-P3a-v2 Mal-Mir-124-P3b-v1 Mal-Mir-124-P3b-v2 Mal-Mir-124-P4-v1 Mal-Mir-124-P4-v2 Mdo-Mir-124-P1-v1 Mdo-Mir-124-P1-v2 Mdo-Mir-124-P2-v1 Mdo-Mir-124-P2-v2 Mdo-Mir-124-P3-v1 Mdo-Mir-124-P3-v2 Mml-Mir-124-P1-v1 Mml-Mir-124-P1-v2 Mml-Mir-124-P2-v1 Mml-Mir-124-P2-v2 Mml-Mir-124-P3-v1 Mml-Mir-124-P3-v2 Mmu-Mir-124-P1-v1 Mmu-Mir-124-P1-v2 Mmu-Mir-124-P2-v1 Mmu-Mir-124-P2-v2 Mmu-Mir-124-P3-v1 Mmu-Mir-124-P3-v2 Mun-Mir-124-P1-v1 Mun-Mir-124-P1-v2 Mun-Mir-124-P2-v1 Mun-Mir-124-P2-v2 Mun-Mir-124-P3-v1 Mun-Mir-124-P3-v2 Mun-Mir-124-P4-v1 Mun-Mir-124-P4-v2 Npo-Mir-124 Oan-Mir-124-P1-v1 Oan-Mir-124-P1-v2 Oan-Mir-124-P3-v1 Oan-Mir-124-P3-v2 Oan-Mir-124-P4-v1 Oan-Mir-124-P4-v2 Obi-Mir-124 Ocu-Mir-124-P1-v1 Ocu-Mir-124-P1-v2 Ocu-Mir-124-P2-v1 Ocu-Mir-124-P2-v2 Ocu-Mir-124-P3-v1 Ocu-Mir-124-P3-v2 Ovu-Mir-124 Pbv-Mir-124-P1-v1 Pbv-Mir-124-P1-v2 Pbv-Mir-124-P2-v1 Pbv-Mir-124-P2-v2 Pbv-Mir-124-P3-v1 Pbv-Mir-124-P3-v2 Pbv-Mir-124-P4a Pbv-Mir-124-P4b-v1 Pbv-Mir-124-P4b-v2 Pfl-Mir-124 Pma-Mir-124-o1 Pma-Mir-124-o2 Pma-Mir-124-o3 Pmi-Mir-124 Rno-Mir-124-P1-v1 Rno-Mir-124-P1-v2 Rno-Mir-124-P2-v1 Rno-Mir-124-P2-v2 Rno-Mir-124-P3-v1 Rno-Mir-124-P3-v2 Sha-Mir-124-P1-v1 Sha-Mir-124-P1-v2 Sha-Mir-124-P2-v1 Sha-Mir-124-P2-v2 Sha-Mir-124-P3-v1 Sha-Mir-124-P3-v2 Sko-Mir-124 Sme-Mir-124-P31a Sme-Mir-124-P31b Sme-Mir-124-P32 Sme-Mir-124-P33 Sme-Mir-124-P34 Sme-Mir-124-P35 Sme-Mir-124-P36 Spt-Mir-124-P1 Spt-Mir-124-P2 Spt-Mir-124-P3e Spt-Mir-124-P3f Spt-Mir-124-P4 Spu-Mir-124 Sto-Mir-124-P1-v1 Sto-Mir-124-P1-v2 Sto-Mir-124-P2-v1 Sto-Mir-124-P2-v2 Sto-Mir-124-P3-v1 Sto-Mir-124-P3-v2 Sto-Mir-124-P4-v1 Sto-Mir-124-P4-v2 Tca-Mir-124 Tgu-Mir-124-P1-v1 Tgu-Mir-124-P1-v2 Tgu-Mir-124-P2-v1 Tgu-Mir-124-P2-v2 Tgu-Mir-124-P3-v1 Tgu-Mir-124-P3-v2 Tni-Mir-124-P1b-v1 Tni-Mir-124-P1b-v2 Tni-Mir-124-P2a-v1 Tni-Mir-124-P2a-v2 Tni-Mir-124-P2b-v1 Tni-Mir-124-P2b-v2 Tni-Mir-124-P4-v1 Tni-Mir-124-P4-v2 Xbo-Mir-124 Xla-Mir-124-P1c-v1 Xla-Mir-124-P1c-v2 Xla-Mir-124-P1d-v1 Xla-Mir-124-P1d-v2 Xla-Mir-124-P2c-v1 Xla-Mir-124-P2c-v2 Xla-Mir-124-P2d-v1 Xla-Mir-124-P2d-v2 Xla-Mir-124-P3c-v1 Xla-Mir-124-P3c-v2 Xla-Mir-124-P3d-v1 Xla-Mir-124-P3d-v2 Xtr-Mir-124-P1-v1 Xtr-Mir-124-P1-v2 Xtr-Mir-124-P2-v1 Xtr-Mir-124-P2-v2 Xtr-Mir-124-P3-v1 Xtr-Mir-124-P3-v2

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)

Bf_V2_32:1879500-1880400: 435-493 [+] UCSC

Precursor
(pre-Mir +30nt flank)

UAUCCCUCGGCAAAUCUCGGCUUGGCUCUUAGUGUUCACGGCGGUCCUUAAUUUAACAUUGUGCAAUUAAGGCACGCGGUGAAUGCCAAGAACAGGGCCAAAUCCUCACCGAUCUCCCU

Get precursor sequence

Structure

        10          20        30        40        50         
UAUCCCUCGGCAAAUCUC--|    GGC    A        G   GU       UUAACA 
                    GGCUU   UCUU GUGUUCAC GCG  CCUUAAU      \
                    CCGGG   AGAA CGUAAGUG CGC  GGAAUUA      U
UCCCUCUAGCCACUCCUAAA^    ACA    C        G   AC       ACGUGU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

To

Mature sequence

Bfl-Mir-124_5p

mirBase accession

Sequence

0- AGUGUUCACGGCGGUCCUUAAU -22

Get sequence

Star sequence

Bfl-Mir-124_3p* (predicted)

mirBase accession

Sequence

37- UAAGGCACGCGGUGAAUGCCAA -59

Get sequence