Mir-124-P12

MirGeneDB ID

Lgi-Mir-124-P12

Family name

MIR-124 (all species)

Species

Owl limpet (Lottia gigantea)

MiRBase ID

lgi-mir-124

Paralogues

Lgi-Mir-124-P13

Orthologues

Aae-Mir-124 Aga-Mir-124 Agr-Mir-124 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Cel-Mir-124 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dpu-Mir-124 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Esc-Mir-124 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Isc-Mir-124 Lan-Mir-124 Lhy-Mir-124 Llo-Mir-124 Mgi-Mir-124 Mom-Mir-124 Npo-Mir-124 Obi-Mir-124 Ofu-Mir-124 Ovu-Mir-124 Pau-Mir-124 Pdu-Mir-124 Pfl-Mir-124 Pmi-Mir-124 Pve-Mir-124 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spu-Mir-124 Sro-Mir-124 Tca-Mir-124 War-Mir-124 Xbo-Mir-124

Node of Origin (locus)

L. gigantea

Node of Origin (family)

Bilateria

Genome context
(Lotgi1)

LOTGIsca_15: 2554528-2554585 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-124-P12)

Mir-124-P12 LOTGIsca_15: 2554528-2554585 [+] Ensembl
Mir-124-P13 LOTGIsca_15: 2557525-2557581 [+] Ensembl

Seed

AAGGCAC

Precursor
(pre-Mir +30nt flank)

CAUUCUUAAUCCAAAAUGGCGGAUCUGUUAGUGUUCACUGUGAAAGCCUUGGUGUAAUUAAAACUAUUAAGGCACGCGGUGAAUGCCAAUAGGUCGUCAAUAUCUUCUUAAAGAAGCU

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Structure

        10           20        30        40        50         
CAUUCUUAAUCCAAAAU---|   G       A            AAA        GUAAU 
                    GGCG AUCUGUU GUGUUCACUGUG   GCCUUGGU     U
                    CUGC UGGAUAA CGUAAGUGGCGC   CGGAAUUA     A
UCGAAGAAAUUCUUCUAUAA^   -       C            A--        UCAAA 
      110       100         90        80          70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Lgi-Mir-124-P12_5p* (predicted)

mirBase accession

None

Sequence

0- GUGUUCACUGUGAAAGCCUUGGU -23

Get sequence

Mature sequence

Lgi-Mir-124-P12_3p

mirBase accession

MIMAT0009578

Sequence

37- UAAGGCACGCGGUGAAUGCCA -58

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