MirGeneDB 3.0

MirGeneDB ID

Spu-Mir-124

Family name

MIR-124 (all species)

Species

Purple sea urchin (Strongylocentrotus purpuratus)

MiRBase ID

spu-mir-124

Paralogues

Orthologues

Aae-Mir-124 Aca-Mir-124-P1-v1 Aca-Mir-124-P2-v1 Aca-Mir-124-P3-v1 Aca-Mir-124-P4-v1 Aga-Mir-124 Agr-Mir-124 Ami-Mir-124-P1-v1 Ami-Mir-124-P2-v1 Ami-Mir-124-P3-v1 Ami-Mir-124-P4-v1 Asu-Mir-124 Ava-Mir-124-P37 Ava-Mir-124-P38 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Bta-Mir-124-P1-v1 Bta-Mir-124-P2-v1 Bta-Mir-124-P3-v1 Cbr-Mir-124-P9 Cbr-Mir-124-P10 Cbr-Mir-124-P11 Cel-Mir-124 Cfa-Mir-124-P1-v1 Cfa-Mir-124-P2-v1 Cfa-Mir-124-P3-v1 Cin-Mir-124-P7 Cin-Mir-124-P8 Cja-Mir-124-P1-v1 Cja-Mir-124-P2-v1 Cja-Mir-124-P3-v1 Cli-Mir-124-P1-v1 Cli-Mir-124-P3-v1 Cmi-Mir-124-P1-v1 Cmi-Mir-124-P2-v1 Cmi-Mir-124-P3-v1 Cmi-Mir-124-P4 Cpi-Mir-124-P1-v1 Cpi-Mir-124-P2-v1 Cpi-Mir-124-P3-v1 Cpi-Mir-124-P4-v1 Cpo-Mir-124-P1-v1 Cpo-Mir-124-P2-v1 Cpo-Mir-124-P3-v1 Csc-Mir-124-P25 Csc-Mir-124-P26 Cte-Mir-124 Dan-Mir-124 Dgr-Mir-124-P39 Dgr-Mir-124-P40 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dno-Mir-124-P1-v1 Dno-Mir-124-P2-v1 Dno-Mir-124-P3-v1 Dpu-Mir-124 Dre-Mir-124-P1a-v1 Dre-Mir-124-P1b-v1 Dre-Mir-124-P2a-v1 Dre-Mir-124-P3a-v1 Dre-Mir-124-P3b-v1 Dre-Mir-124-P4-v1 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Ebu-Mir-124-P5-v1 Ebu-Mir-124-P6-v1 Eca-Mir-124-P1-v1 Eca-Mir-124-P2-v1 Eca-Mir-124-P3-v1 Efe-Mir-124-P14 Efe-Mir-124-P15 Efe-Mir-124-P16 Efe-Mir-124-P17 Efe-Mir-124-P18 Egr-Mir-124-o8 Egr-Mir-124-o9 Esc-Mir-124 Ete-Mir-124-P1-v1 Ete-Mir-124-P2-v1 Gga-Mir-124-P1-v1 Gga-Mir-124-P2-v1 Gga-Mir-124-P3-v1 Gga-Mir-124-P4-v1 Gja-Mir-124-P1-v1 Gja-Mir-124-P2-v1 Gja-Mir-124-P3-v1 Gja-Mir-124-P4-v1 Gmo-Mir-124-P1a-v1 Gmo-Mir-124-P1b-v1 Gmo-Mir-124-P3a-v1 Gmo-Mir-124-P3b-v1 Gmo-Mir-124-P4-v1 Gpa-Mir-124 Gsa-Mir-124-o6 Gsa-Mir-124-o7 Gsp-Mir-124 Hme-Mir-124 Hmi-Mir-124-P41 Hmi-Mir-124-P42 Hmi-Mir-124-P43 Hru-Mir-124 Hsa-Mir-124-P1-v1 Hsa-Mir-124-P2-v1 Hsa-Mir-124-P3-v1 Isc-Mir-124 Laf-Mir-124-P1-v1 Laf-Mir-124-P2-v1 Laf-Mir-124-P3-v1 Lan-Mir-124 Lch-Mir-124-P1 Lch-Mir-124-P2 Lch-Mir-124-P3 Lch-Mir-124-P4 Lgi-Mir-124-P12 Lgi-Mir-124-P13 Lhy-Mir-124 Llo-Mir-124 Loc-Mir-124-P1-v1 Loc-Mir-124-P2-v1 Loc-Mir-124-P3-v1 Loc-Mir-124-P4-v1 Lpo-Mir-124-P19 Lpo-Mir-124-P20 Lpo-Mir-124-P21 Lpo-Mir-124-P22 Lpo-Mir-124-P23 Lpo-Mir-124-P24 Mal-Mir-124-P1a-v1 Mal-Mir-124-P1b-v1 Mal-Mir-124-P2a-v1 Mal-Mir-124-P3a-v1 Mal-Mir-124-P3b-v1 Mal-Mir-124-P4-v1 Mdo-Mir-124-P1-v1 Mdo-Mir-124-P2-v1 Mdo-Mir-124-P3-v1 Mgi-Mir-124 Mml-Mir-124-P1-v1 Mml-Mir-124-P2-v1 Mml-Mir-124-P3-v1 Mmr-Mir-124-P1-v1 Mmr-Mir-124-P2-v1 Mmr-Mir-124-P3-v1 Mmu-Mir-124-P1-v1 Mmu-Mir-124-P2-v1 Mmu-Mir-124-P3-v1 Mom-Mir-124 Mun-Mir-124-P1-v1 Mun-Mir-124-P2-v1 Mun-Mir-124-P3-v1 Mun-Mir-124-P4-v1 Neu-Mir-124-P1-v1 Neu-Mir-124-P2-v1 Neu-Mir-124-P3-v1 Npo-Mir-124 Oan-Mir-124-P1-v1 Oan-Mir-124-P3-v1 Oan-Mir-124-P4-v1 Obi-Mir-124 Ocu-Mir-124-P1-v1 Ocu-Mir-124-P2-v1 Ocu-Mir-124-P3-v1 Ofu-Mir-124 Ovu-Mir-124 Pab-Mir-124-P1-v1 Pab-Mir-124-P2-v1 Pab-Mir-124-P3-v1 Pau-Mir-124 Pbv-Mir-124-P1-v1 Pbv-Mir-124-P2-v1 Pbv-Mir-124-P3-v1 Pbv-Mir-124-P4a Pbv-Mir-124-P4b-v1 Pcr-Mir-124-o4 Pcr-Mir-124-o5 Pdu-Mir-124 Pfl-Mir-124 Pma-Mir-124-o1 Pma-Mir-124-o2 Pma-Mir-124-o3 Pmi-Mir-124 Pve-Mir-124 Rno-Mir-124-P1-v1 Rno-Mir-124-P2-v1 Rno-Mir-124-P3-v1 Rph-Mir-124-P27 Rph-Mir-124-P28 Sha-Mir-124-P1-v1 Sha-Mir-124-P2-v1 Sha-Mir-124-P3-v1 Sko-Mir-124 Sma-Mir-124 Sme-Mir-124-P29 Sme-Mir-124-P30 Sme-Mir-124-P31a Sme-Mir-124-P31b Sme-Mir-124-P32 Sme-Mir-124-P33 Sme-Mir-124-P34 Sne-Mir-124 Snu-Mir-124 Spt-Mir-124-P1 Spt-Mir-124-P2 Spt-Mir-124-P3e Spt-Mir-124-P3f Spt-Mir-124-P4 Sro-Mir-124 Sto-Mir-124-P1-v1 Sto-Mir-124-P2-v1 Sto-Mir-124-P3-v1 Sto-Mir-124-P4-v1 Tca-Mir-124 Tgu-Mir-124-P1-v1 Tgu-Mir-124-P2-v1 Tgu-Mir-124-P3-v1 Tni-Mir-124-P1b-v1 Tni-Mir-124-P2a-v1 Tni-Mir-124-P2b-v1 Tni-Mir-124-P4-v1 Tur-Mir-124-P46 Tur-Mir-124-P47 War-Mir-124 Xbo-Mir-124 Xla-Mir-124-P1c-v1 Xla-Mir-124-P1d-v1 Xla-Mir-124-P2c-v1 Xla-Mir-124-P2d-v1 Xla-Mir-124-P3c-v1 Xla-Mir-124-P3d-v1 Xtr-Mir-124-P1-v1 Xtr-Mir-124-P2-v1 Xtr-Mir-124-P3-v1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Spur_5.0)

AAGJ06000013.1: 11029956-11030016 [-] Ensembl

Seed

Precursor
(pre-Mir +30nt flank)

UCGCUGCUUCUUCUUAUCCAUCCCGUUCUUAGUGUUCACUGUGAUCCUUGAUUUAUAUUCUAAAACAAUUAAGGCACGCGGUGAAUGCCAAGGCUCGAGGGUGAAAUUUCAUCCACAAUCA

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Structure

        10        20          30        40        50          
UCGCUGCUUCUUCUUAUC     -  U-|   A            AU       UUAUAUU 
                  CAUCC CG  UCUU GUGUUCACUGUG  CCUUGAU       \
                  GUGGG GC  GGAA CGUAAGUGGCGC  GGAAUUA       C
ACUAACACCUACUUUAAA     A  UC^   C            AC       ACAAAAU 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

No

Motifs

No

Tissue expression

-

+

32	Bl	Eg	Ga	Ov	Pl	To	To

Star sequence

Spu-Mir-124_5p*

mirBase accession

None

Sequence

0- AGUGUUCACUGUGAUCCUUGAU -22

Get sequence

Mature sequence

Spu-Mir-124_3p

mirBase accession

Sequence

39- UAAGGCACGCGGUGAAUGCCAA -61

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