Mir-124-P30

MirGeneDB ID

Sme-Mir-124-P30

Family name

MIR-124 (all species)

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-124e

Paralogues

Sme-Mir-124-P29 Sme-Mir-124-P31a Sme-Mir-124-P31b Sme-Mir-124-P32 Sme-Mir-124-P33 Sme-Mir-124-P34

Orthologues

Aae-Mir-124 Aga-Mir-124 Agr-Mir-124 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Cel-Mir-124 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dpu-Mir-124 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Esc-Mir-124 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Isc-Mir-124 Lan-Mir-124 Lhy-Mir-124 Llo-Mir-124 Mgi-Mir-124 Mom-Mir-124 Npo-Mir-124 Obi-Mir-124 Ofu-Mir-124 Ovu-Mir-124 Pau-Mir-124 Pdu-Mir-124 Pfl-Mir-124 Pmi-Mir-124 Pve-Mir-124 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spu-Mir-124 Sro-Mir-124 Tca-Mir-124 War-Mir-124 Xbo-Mir-124

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Bilateria

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000020_dd_Smes_g4_20: 1711770-1711822 [-] UCSC Ensembl

Seed

AAGGCAC

Precursor
(pre-Mir +30nt flank)

AAAAUUUCAAUUCAAUAAAUUAUUCUACUGCCAUUCUCAGUUGGAGUCUUGAUAUGAUCUAUUAAGGCACGCUGUGAAUGCCAAGGAAUUUUAUUUCUCUUCUUUAUUAUUAU

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Structure

        10        20           30        40        50       
AAAAUUUCAAUUCAAUAAAUU---|    AC  C     U    U GA        AUG 
                        AUUCU  UG CAUUC CAGU G  GUCUUGAU   \
                        UAAGG  AC GUAAG GUCG C  CGGAAUUA   A
UAUUAUUAUUUCUUCUCUUUAUUU^    A-  C     U    - A-        UCU 
 110       100        90         80         70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ag	Ag	Di	Gf	Ne	Ph	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Wh	Wh	Wh

Star sequence

Sme-Mir-124-P30_5p*

mirBase accession

MIMAT0012138

Sequence

0- CCAUUCUCAGUUGGAGUCUUGAU -23

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Mature sequence

Sme-Mir-124-P30_3p

mirBase accession

MIMAT0011239

Sequence

32- UAAGGCACGCUGUGAAUGCCA -53

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