MirGeneDB 2.1

MirGeneDB ID

Sme-Mir-124-P31a

Family name MIR-124 (all species)
Seed AAGGCAC
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-124a
Paralogues Sme-Mir-124-P31b  Sme-Mir-124-P32  Sme-Mir-124-P33  Sme-Mir-124-P34  Sme-Mir-124-P35  Sme-Mir-124-P36 
Orthologues Aae-Mir-124  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bla-Mir-124  Cel-Mir-124  Cte-Mir-124  Dan-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dsi-Mir-124  Dya-Mir-124  Esc-Mir-124  Hme-Mir-124  Isc-Mir-124  Lan-Mir-124  Npo-Mir-124  Obi-Mir-124  Ovu-Mir-124  Pfl-Mir-124  Pmi-Mir-124  Sko-Mir-124  Spu-Mir-124  Tca-Mir-124  Xbo-Mir-124 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)
NNSW01000161_dd_Smes_g4_161: 1391253-1391311 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGAAAGUAAUAAAAAGUUCAAUCAGAUGUGCUUUUAACGCGGAGCUUUAGUAAUUUAACAUGUAUACUAAGGCACGCGGUGAAUGCUUACUUGAUUGAGUAAUAAUCAAUUUUUACAU
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Structure
        10          20        30        40        50         
UGGAAAGUAAUAAAAAG--|        A  U  U    A    GA        AAUUUA 
                   UUCAAUCAG UG GC UUUA CGCG  GCUUUAGU      A
                   GAGUUAGUU AU CG AAGU GCGC  CGGAAUCA      C
UACAUUUUUAACUAAUAAU^        C  U  U    G    A-        UAUGUA 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Star sequence

Sme-Mir-124-P31a_5p*

mirBase accessionMIMAT0012112
Sequence
0- GCUUUUAACGCGGAGCUUUAGU -22
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Mature sequence

Sme-Mir-124-P31a_3p

mirBase accessionMIMAT0003992
Sequence
38- UAAGGCACGCGGUGAAUGCUU -59
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