Mir-124-P34

MirGeneDB ID

Sme-Mir-124-P34

Family name

MIR-124 (all species)

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-124c-2

Paralogues

Sme-Mir-124-P29 Sme-Mir-124-P30 Sme-Mir-124-P31a Sme-Mir-124-P31b Sme-Mir-124-P32 Sme-Mir-124-P33

Orthologues

Aae-Mir-124 Aga-Mir-124 Agr-Mir-124 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Cel-Mir-124 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dpu-Mir-124 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Esc-Mir-124 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Isc-Mir-124 Lan-Mir-124 Lhy-Mir-124 Llo-Mir-124 Mgi-Mir-124 Mom-Mir-124 Npo-Mir-124 Obi-Mir-124 Ofu-Mir-124 Ovu-Mir-124 Pau-Mir-124 Pdu-Mir-124 Pfl-Mir-124 Pmi-Mir-124 Pve-Mir-124 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spu-Mir-124 Sro-Mir-124 Tca-Mir-124 War-Mir-124 Xbo-Mir-124

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Bilateria

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000102_dd_Smes_g4_102: 910443-910504 [-] UCSC Ensembl

Seed

AAGGCAC

Precursor
(pre-Mir +30nt flank)

UAGAUUGAAAACUCCCAUUAUAUUCAUGAAGCAUUAACCCUGUUGUCUUAGAUAGUUUAUUACAAAACAUUUAAGGCACGCGGUGAAUGCCAUGUGAAAUGGAAAAUCAUCUUUUCAUUGUU

Get precursor sequence

Structure

        10        20          30        40        50        60 
UAGAUUGAAAACUCCCAUUAUA--|     AA     A   C   U        UAGUUUAU 
                        UUCAUG  GCAUU ACC UGU GUCUUAGA        \
                        AAGUGU  CGUAA UGG GCA CGGAAUUU        U
UUGUUACUUUUCUACUAAAAGGUA^     AC     G   C   -        ACAAAACA 
120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ag	Ag	Di	Gf	Ne	Ph	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Wh	Wh	Wh

Star sequence

Sme-Mir-124-P34_5p*

mirBase accession

MIMAT0013778

Sequence

0- GCAUUAACCCUGUUGUCUUAGA -22

Get sequence

Mature sequence

Sme-Mir-124-P34_3p

mirBase accession

MIMAT0003995

Sequence

41- UAAGGCACGCGGUGAAUGCCA -62

Get sequence