MirGeneDB 2.1
MirGeneDB ID

Gmo-Mir-124-P4-v1

Family name MIR-124 (all species)
Seed AAGGCAC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-124-5
Paralogues Gmo-Mir-124-P1a-v1  Gmo-Mir-124-P1a-v2  Gmo-Mir-124-P1b-v1  Gmo-Mir-124-P1b-v2  Gmo-Mir-124-P3a-v1  Gmo-Mir-124-P3a-v2  Gmo-Mir-124-P3b-v1  Gmo-Mir-124-P3b-v2  Gmo-Mir-124-P4-v2 
Orthologues Aae-Mir-124  Aca-Mir-124-P4-v1  Aca-Mir-124-P4-v2  Ami-Mir-124-P4-v1  Ami-Mir-124-P4-v2  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bla-Mir-124  Cel-Mir-124  Cmi-Mir-124-P4  Cpi-Mir-124-P4-v1  Cpi-Mir-124-P4-v2  Cte-Mir-124  Dan-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dre-Mir-124-P4-v1  Dre-Mir-124-P4-v2  Dsi-Mir-124  Dya-Mir-124  Esc-Mir-124  Gga-Mir-124-P4-v1  Gga-Mir-124-P4-v2  Gja-Mir-124-P4-v1  Gja-Mir-124-P4-v2  Hme-Mir-124  Isc-Mir-124  Lan-Mir-124  Lch-Mir-124-P4  Loc-Mir-124-P4-v1  Loc-Mir-124-P4-v2  Mal-Mir-124-P4-v1  Mal-Mir-124-P4-v2  Mun-Mir-124-P4-v1  Mun-Mir-124-P4-v2  Npo-Mir-124  Oan-Mir-124-P4-v1  Oan-Mir-124-P4-v2  Obi-Mir-124  Ovu-Mir-124  Pbv-Mir-124-P4a  Pbv-Mir-124-P4b-v1  Pbv-Mir-124-P4b-v2  Pfl-Mir-124  Pmi-Mir-124  Sko-Mir-124  Spt-Mir-124-P4  Spu-Mir-124  Sto-Mir-124-P4-v1  Sto-Mir-124-P4-v2  Tca-Mir-124  Tni-Mir-124-P4-v1  Tni-Mir-124-P4-v2  Xbo-Mir-124 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_1848: 51872-51931 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-124-P4-v1)		 Mir-124-P4-v1 GeneScaffold_1848: 51872-51931 [+] UCSC Ensembl
Mir-124-P4-v2 GeneScaffold_1848: 51872-51930 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUCGGAAAGUUCUUUGGGUUUCAGCUCUUUGUGUUCACAGUGGACCUUGAUUUAAUUUCAAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCCCCAGUCAUCGCUGAGACAUA
Get precursor sequence
Structure
        10           20        30        40        50         
GUUCGGAAAGUUCUUUG---|     AG     U        A   GA       UUAAUU 
                    GGUUUC  CUCUU GUGUUCAC GUG  CCUUGAU      U
                    CCGAAG  GAGAA CGUAAGUG CGC  GGAAUUA      C
AUACAGAGUCGCUACUGACC^     A-     C        G   AC       ACAUAA 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-124-P4-v1_5p*
mirBase accessionNone
Sequence 
0- UGUGUUCACAGUGGACCUUGAU -22
Get sequence
Mature sequence

Gmo-Mir-124-P4-v1_3p
mirBase accessionMIMAT0044016
Sequence 
38- UAAGGCACGCGGUGAAUGCCAA -60
Get sequence