MirGeneDB

MirGeneDB ID

Aca-Mir-124-P4-v1

Family name MIR-124 (all species)
Seed AAGGCAC
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-124a-3
Paralogues Aca-Mir-124-P1-v1  Aca-Mir-124-P1-v2  Aca-Mir-124-P2-v1  Aca-Mir-124-P2-v2  Aca-Mir-124-P3-v1  Aca-Mir-124-P3-v2  Aca-Mir-124-P4-v2 
Orthologues Aae-Mir-124  Ami-Mir-124-P4-v1  Ami-Mir-124-P4-v2  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Cel-Mir-124  Cpi-Mir-124-P4-v1  Cpi-Mir-124-P4-v2  Cte-Mir-124  Dan-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dre-Mir-124-P4-v1  Dre-Mir-124-P4-v2  Gga-Mir-124-P4-v1  Gga-Mir-124-P4-v2  Hme-Mir-124  Isc-Mir-124  Lan-Mir-124  Oan-Mir-124-P4-v1  Oan-Mir-124-P4-v2  Pfl-Mir-124  Pmi-Mir-124  Sko-Mir-124  Spu-Mir-124  Sto-Mir-124-P4-v1  Sto-Mir-124-P4-v2  Tca-Mir-124 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(anoCar2)
GL344007.1: 104544-104603 [-] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-124-P4-v1)
Mir-124-P4-v1 GL344007.1: 104544-104603 [-] UCSC Ensembl
Mir-124-P4-v2 GL344007.1: 104545-104603 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUCCUUCCUCCCCCCAGGGCUUGGCCCUUCGUGUUCACAGUGGACCUUGAUUUCAUGUGGACACAAUUAAGGCACGCGGUGAAUGCCAAGAGCCCAGCCCCUGCCCUCCGGACGCCGGA
Get precursor sequence
Structure
        10          20        30        40        50         
CCUCCUUCCUCCCCCCA--|    U   C   C        A   GA       UUCAUG 
                   GGGCU GGC CUU GUGUUCAC GUG  CCUUGAU      U
                   CCCGA CCG GAA CGUAAGUG CGC  GGAAUUA      G
AGGCCGCAGGCCUCCCGUC^    C   A   C        G   AC       ACACAG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sk To Wh
Star sequence

Aca-Mir-124-P4-v1_5p*

MirBase accessionNone
Sequence
0- CGUGUUCACAGUGGACCUUGAU -22
Get sequence
Mature sequence

Aca-Mir-124-P4-v1_3p

MirBase accessionMIMAT0021725
Sequence
38- UAAGGCACGCGGUGAAUGCCAA -60
Get sequence