MirGeneDB 2.1
MirGeneDB ID

Spt-Mir-124-P4

Family name MIR-124 (all species)
Seed AAGGCAC
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-124-P1  Spt-Mir-124-P2  Spt-Mir-124-P3e  Spt-Mir-124-P3f 
Orthologues Aae-Mir-124  Aca-Mir-124-P4-v1  Aca-Mir-124-P4-v2  Ami-Mir-124-P4-v1  Ami-Mir-124-P4-v2  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bla-Mir-124  Cel-Mir-124  Cmi-Mir-124-P4  Cpi-Mir-124-P4-v1  Cpi-Mir-124-P4-v2  Cte-Mir-124  Dan-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dre-Mir-124-P4-v1  Dre-Mir-124-P4-v2  Dsi-Mir-124  Dya-Mir-124  Esc-Mir-124  Gga-Mir-124-P4-v1  Gga-Mir-124-P4-v2  Gja-Mir-124-P4-v1  Gja-Mir-124-P4-v2  Gmo-Mir-124-P4-v1  Gmo-Mir-124-P4-v2  Hme-Mir-124  Isc-Mir-124  Lan-Mir-124  Lch-Mir-124-P4  Loc-Mir-124-P4-v1  Loc-Mir-124-P4-v2  Mal-Mir-124-P4-v1  Mal-Mir-124-P4-v2  Mun-Mir-124-P4-v1  Mun-Mir-124-P4-v2  Npo-Mir-124  Oan-Mir-124-P4-v1  Oan-Mir-124-P4-v2  Obi-Mir-124  Ovu-Mir-124  Pbv-Mir-124-P4a  Pbv-Mir-124-P4b-v1  Pbv-Mir-124-P4b-v2  Pfl-Mir-124  Pmi-Mir-124  Sko-Mir-124  Spu-Mir-124  Sto-Mir-124-P4-v1  Sto-Mir-124-P4-v2  Tca-Mir-124  Tni-Mir-124-P4-v1  Tni-Mir-124-P4-v2  Xbo-Mir-124 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)		 QEPC01004821.1: 125986-126044 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCCCAACUUGUGCCUGGCUUAAGCCCUUCGUGUUCACAGCGGACCUUGAUUUAAUUUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCCAGAAUGUACAUCUACCCCCA
Get precursor sequence
Structure
        10           20        30        40        50         
CCCCCCAACUUGUGCCU---|    AAGCC   C        A   GA       UUAAUU 
                    GGCUU     CUU GUGUUCAC GCG  CCUUGAU      \
                    CCGAA     GAA CGUAAGUG CGC  GGAAUUA      U
ACCCCCAUCUACAUGUAAGA^    GAGA-   C        G   AC       ACAUAC 
       110       100         90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Star sequence

Spt-Mir-124-P4_5p* (predicted)
mirBase accessionNone
Sequence 
0- CGUGUUCACAGCGGACCUUGAU -22
Get sequence
Mature sequence

Spt-Mir-124-P4_3p (predicted)
mirBase accessionNone
Sequence 
37- UAAGGCACGCGGUGAAUGCCAA -59
Get sequence