MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-124-P4

Family name MIR-124 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-124-P1  Lch-Mir-124-P2  Lch-Mir-124-P3 
Orthologues Aae-Mir-124  Aca-Mir-124-P4-v1  Aga-Mir-124  Agr-Mir-124  Ami-Mir-124-P4-v1  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bko-Mir-124  Bla-Mir-124  Bpl-Mir-124  Cel-Mir-124  Cmi-Mir-124-P4  Cpi-Mir-124-P4-v1  Cte-Mir-124  Dan-Mir-124  Dlo-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dre-Mir-124-P4-v1  Dsi-Mir-124  Dya-Mir-124  Eba-Mir-124  Esc-Mir-124  Gga-Mir-124-P4-v1  Gja-Mir-124-P4-v1  Gmo-Mir-124-P4-v1  Gpa-Mir-124  Gsp-Mir-124  Hme-Mir-124  Hru-Mir-124  Isc-Mir-124  Lan-Mir-124  Lhy-Mir-124  Llo-Mir-124  Loc-Mir-124-P4-v1  Mal-Mir-124-P4-v1  Mgi-Mir-124  Mom-Mir-124  Mun-Mir-124-P4-v1  Npo-Mir-124  Oan-Mir-124-P4-v1  Obi-Mir-124  Ofu-Mir-124  Ovu-Mir-124  Pau-Mir-124  Pbv-Mir-124-P4a  Pbv-Mir-124-P4b-v1  Pcr-Mir-124-o4  Pdu-Mir-124  Pfl-Mir-124  Pmi-Mir-124  Pve-Mir-124  Sko-Mir-124  Sma-Mir-124  Sne-Mir-124  Snu-Mir-124  Spt-Mir-124-P4  Spu-Mir-124  Sro-Mir-124  Sto-Mir-124-P4-v1  Tca-Mir-124  Tni-Mir-124-P4-v1  War-Mir-124  Xbo-Mir-124 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 BAHO01233834.1: 2153-2211 [+] Ensembl
Seed AAGGCAC
Precursor
(pre-Mir +30nt flank)		 
CGUGCAUGUGUGUGUGUGGUUGAAGCUCUGCGUGUUCACCGUGGACCUUGAUUUAAUUUUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAACCAACAUUGCAGCACCCUCUCG
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Structure
        10           20         30        40        50         
CGUGCAUGUGUGUGUGU---|   GAAG    - C            GA       UUAAUU 
                    GGUU    CUCU G GUGUUCACCGUG  CCUUGAU      \
                    CCAA    GAGA C CGUAAGUGGCGC  GGAAUUA      U
GCUCUCCCACGACGUUACAA^   AGA-    A -            AC       ACAUAU 
       110       100         90         80        70        60
Deep sequencing
CommentNot in assembly but in trace archives.
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Star sequence

Lch-Mir-124-P4_5p* (predicted)
mirBase accessionNone
Sequence 
0- CGUGUUCACCGUGGACCUUGAU -22
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Mature sequence

Lch-Mir-124-P4_3p (predicted)
mirBase accessionNone
Sequence 
37- UAAGGCACGCGGUGAAUGCCAA -59
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