MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-124-P4

Family name MIR-124 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-124b
Paralogues Gga-Mir-124-P1-v1  Gga-Mir-124-P2-v1  Gga-Mir-124-P3-v1 
Orthologues Aae-Mir-124  Aca-Mir-124-P4-v1  Aga-Mir-124  Agr-Mir-124  Ami-Mir-124-P4-v1  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bko-Mir-124  Bla-Mir-124  Bpl-Mir-124  Cel-Mir-124  Cmi-Mir-124-P4  Cpi-Mir-124-P4-v1  Cte-Mir-124  Dan-Mir-124  Dlo-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dre-Mir-124-P4-v1  Dsi-Mir-124  Dya-Mir-124  Eba-Mir-124  Esc-Mir-124  Gja-Mir-124-P4-v1  Gmo-Mir-124-P4-v1  Gpa-Mir-124  Gsp-Mir-124  Hme-Mir-124  Hru-Mir-124  Isc-Mir-124  Lan-Mir-124  Lch-Mir-124-P4  Lhy-Mir-124  Llo-Mir-124  Loc-Mir-124-P4-v1  Mal-Mir-124-P4-v1  Mgi-Mir-124  Mom-Mir-124  Mun-Mir-124-P4-v1  Npo-Mir-124  Oan-Mir-124-P4-v1  Obi-Mir-124  Ofu-Mir-124  Ovu-Mir-124  Pau-Mir-124  Pbv-Mir-124-P4a  Pbv-Mir-124-P4b-v1  Pcr-Mir-124-o4  Pdu-Mir-124  Pfl-Mir-124  Pmi-Mir-124  Pve-Mir-124  Sko-Mir-124  Sma-Mir-124  Sne-Mir-124  Snu-Mir-124  Spt-Mir-124-P4  Spu-Mir-124  Sro-Mir-124  Sto-Mir-124-P4-v1  Tca-Mir-124  Tni-Mir-124-P4-v1  War-Mir-124  Xbo-Mir-124 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gallus_gallus.GRCg6a)		 23: 2379323-2379381 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-124-P4-v1)		 Mir-124-P4-v1 23: 2379323-2379381 [+] UCSC Ensembl
Mir-124-P4-v2 23: 2379323-2379380 [+] UCSC Ensembl
Variant

Gga-Mir-124-P4-v1
Seed AAGGCAC
Precursor
(pre-Mir +30nt flank)		 
GCGCUCCUCCAGCCAUCAGCCCCAGCGUUUUGUGUUCACUGCAGACCUUGAUUUAAUGUCACACGAUUAAGGCACGCAGUGAAUGCCAAAGUUUGGGGCAGCCUGGGCUGGGGGCUGCU
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Structure
        10          20        30        40        50         
GCGCUCCUCCAGCCAUCA--|      CG   U           AGA       UUAAUG 
                    GCCCCAG  UUU GUGUUCACUGC   CCUUGAU      \
                    CGGGGUU  AAA CGUAAGUGACG   GGAAUUA      U
UCGUCGGGGGUCGGGUCCGA^      UG   C           CAC       GCACAC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-124-P4-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGUGUUCACUGCAGACCUUGAU -22
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Mature sequence

Gga-Mir-124-P4-v1_3p
mirBase accessionMIMAT0001174
Sequence 
37- UAAGGCACGCAGUGAAUGCCAA -59
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Proposed targets TargetScanVert: gga-miR-124b
miRDB: MIMAT0001174
Variant

Gga-Mir-124-P4-v2
Seed UAAGGCA
Precursor
(pre-Mir +30nt flank)		 
GCGCUCCUCCAGCCAUCAGCCCCAGCGUUUUGUGUUCACUGCAGACCUUGAUUUAAUGUCACACGAUUAAGGCACGCAGUGAAUGCCAAAGUUUGGGGCAGCCUGGGCUGGGGGCUGC
Get precursor sequence
Structure
        10         20        30        40        50         
GCGCUCCUCCAGCCAUCA-|      CG   U           AGA        UAAUG 
                   GCCCCAG  UUU GUGUUCACUGC   CCUUGAUU     \
                   CGGGGUU  AAA CGUAAGUGACG   GGAAUUAG     U
CGUCGGGGGUCGGGUCCGA^      UG   C           CAC        CACAC 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-124-P4-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGUGUUCACUGCAGACCUUGAUU -23
Get sequence
Mature sequence

Gga-Mir-124-P4-v2_3p
mirBase accessionMIMAT0001174
Sequence 
36- UUAAGGCACGCAGUGAAUGCCA -58
Get sequence
Proposed targets TargetScanVert: gga-miR-124b
miRDB: MIMAT0001174