Mir-124-o4

MirGeneDB ID

Pcr-Mir-124-o4

Family name

MIR-124 (all species)

Species

Tiger flatworm (Prostheceraeus crozieri )

MiRBase ID

Paralogues

Pcr-Mir-124-o5

Orthologues

Aae-Mir-124 Aca-Mir-124-P4-v1 Aga-Mir-124 Agr-Mir-124 Ami-Mir-124-P4-v1 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Cel-Mir-124 Cmi-Mir-124-P4 Cpi-Mir-124-P4-v1 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dpu-Mir-124 Dre-Mir-124-P4-v1 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Esc-Mir-124 Gga-Mir-124-P4-v1 Gja-Mir-124-P4-v1 Gmo-Mir-124-P4-v1 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Isc-Mir-124 Lan-Mir-124 Lch-Mir-124-P4 Lhy-Mir-124 Llo-Mir-124 Loc-Mir-124-P4-v1 Mal-Mir-124-P4-v1 Mgi-Mir-124 Mom-Mir-124 Mun-Mir-124-P4-v1 Npo-Mir-124 Oan-Mir-124-P4-v1 Obi-Mir-124 Ofu-Mir-124 Ovu-Mir-124 Pau-Mir-124 Pbv-Mir-124-P4a Pbv-Mir-124-P4b-v1 Pdu-Mir-124 Pfl-Mir-124 Pmi-Mir-124 Pve-Mir-124 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spt-Mir-124-P4 Spu-Mir-124 Sro-Mir-124 Sto-Mir-124-P4-v1 Tca-Mir-124 Tni-Mir-124-P4-v1 War-Mir-124 Xbo-Mir-124

Node of Origin (locus)

P. crozeri

Node of Origin (family)

Bilateria

Genome context
(GCA_907163375.1_PROCRO_GENOME_genomic)

CAJQUW010001649.1: 364239-364301 [-] Ensembl

Seed

AAGGCAC

Precursor
(pre-Mir +30nt flank)

AGCCUUUCUGAAAUUCUGGGUUGAUUGUAGGGCCAUCAUUGCGUAGUCUUGAUAUGUUUUUUCAAAAUUAUUAAGGCACGCGGUGAAUGCCAGCUAAUCGCCCGUUAUCAGCAUCACGAAAGG

Get precursor sequence

Structure

        10           20        30        40        50        60 
AGCCUUUCUGAAAUUCU---|   U     UAG   CA         A        AUGUUUU 
                    GGGU GAUUG   GGC  UCAUUGCGU GUCUUGAU       U
                    CCCG CUAAU   CCG  AGUGGCGCA CGGAAUUA       U
GGAAAGCACUACGACUAUUG^   -     CGA   UA         -        UUAAAAC 
 120       110       100         90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Pcr-Mir-124-o4_5p* (predicted)

mirBase accession

None

Sequence

0- GGCCAUCAUUGCGUAGUCUUGAU -23

Get sequence

Mature sequence

Pcr-Mir-124-o4_3p

mirBase accession

None

Sequence

41- UAAGGCACGCGGUGAAUGCCAG -63

Get sequence