Mir-124-P4a

MirGeneDB ID

Pbv-Mir-124-P4a

Family name

MIR-124 (all species)

Species

Burmese python (Python bivittatus)

MiRBase ID

Paralogues

Pbv-Mir-124-P1-v1 Pbv-Mir-124-P2-v1 Pbv-Mir-124-P3-v1 Pbv-Mir-124-P4b-v1

Orthologues

Aae-Mir-124 Aca-Mir-124-P4-v1 Aga-Mir-124 Agr-Mir-124 Ami-Mir-124-P4-v1 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Cel-Mir-124 Cmi-Mir-124-P4 Cpi-Mir-124-P4-v1 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dpu-Mir-124 Dre-Mir-124-P4-v1 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Esc-Mir-124 Gga-Mir-124-P4-v1 Gja-Mir-124-P4-v1 Gmo-Mir-124-P4-v1 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Isc-Mir-124 Lan-Mir-124 Lch-Mir-124-P4 Lhy-Mir-124 Llo-Mir-124 Loc-Mir-124-P4-v1 Mal-Mir-124-P4-v1 Mgi-Mir-124 Mom-Mir-124 Mun-Mir-124-P4-v1 Npo-Mir-124 Oan-Mir-124-P4-v1 Obi-Mir-124 Ofu-Mir-124 Ovu-Mir-124 Pau-Mir-124 Pcr-Mir-124-o4 Pdu-Mir-124 Pfl-Mir-124 Pmi-Mir-124 Pve-Mir-124 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spt-Mir-124-P4 Spu-Mir-124 Sro-Mir-124 Sto-Mir-124-P4-v1 Tca-Mir-124 Tni-Mir-124-P4-v1 War-Mir-124 Xbo-Mir-124

Node of Origin (locus)

P. bivittatus

Node of Origin (family)

Bilateria

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE955369.1: 120652-120711 [+]

Clustered miRNAs
(< 50kb from Mir-124-P4a)

Mir-124-P4a KE955369.1: 120652-120711 [+]
Mir-124-P4b-v1 KE955369.1: 120833-120892 [+]
Mir-124-P4b-v2 KE955369.1: 120833-120891 [+]

Seed

AAGGCAC

Precursor
(pre-Mir +30nt flank)

CUUUUCUUCCCCCGCUUGGCUUAAGCCCUUCGUGUUCACAGCGGACCUUGAUUUAAUUUCGAUACAAUUAAGGCACGCGGUGAAUGCAAAGAGAGAAGCCACGUCCAGCCUCUCCUCNNN

Get precursor sequence

Structure

        10           20        30        40        50         
CUUUUCUUCCCCCGCUU---|    AAGCC   C        A   GA       UUAAUU 
                    GGCUU     CUU GUGUUCAC GCG  CCUUGAU      U
                    CCGAA     GAA CGUAAGUG CGC  GGAAUUA      C
NNNCUCCUCUCCGACCUGCA^    GAGA-   A        G   AC       ACAUAG 
.       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Pbv-Mir-124-P4a_5p*

mirBase accession

None

Sequence

0- CGUGUUCACAGCGGACCUUGAU -22

Get sequence

Mature sequence

Pbv-Mir-124-P4a_3p

mirBase accession

None

Sequence

38- UAAGGCACGCGGUGAAUGCAAA -60

Get sequence