MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-124-P4a

Family name MIR-124 (all species)
Seed AAGGCAC
Species Burmese python (Python bivittatus)
MiRBase ID
Paralogues Pbv-Mir-124-P1-v1  Pbv-Mir-124-P1-v2  Pbv-Mir-124-P2-v1  Pbv-Mir-124-P2-v2  Pbv-Mir-124-P3-v1  Pbv-Mir-124-P3-v2  Pbv-Mir-124-P4b-v1  Pbv-Mir-124-P4b-v2 
Orthologues Aae-Mir-124  Aca-Mir-124-P4-v1  Aca-Mir-124-P4-v2  Ami-Mir-124-P4-v1  Ami-Mir-124-P4-v2  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bla-Mir-124  Cel-Mir-124  Cmi-Mir-124-P4  Cpi-Mir-124-P4-v1  Cpi-Mir-124-P4-v2  Cte-Mir-124  Dan-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dre-Mir-124-P4-v1  Dre-Mir-124-P4-v2  Dsi-Mir-124  Dya-Mir-124  Esc-Mir-124  Gga-Mir-124-P4-v1  Gga-Mir-124-P4-v2  Gja-Mir-124-P4-v1  Gja-Mir-124-P4-v2  Gmo-Mir-124-P4-v1  Gmo-Mir-124-P4-v2  Hme-Mir-124  Isc-Mir-124  Lan-Mir-124  Lch-Mir-124-P4  Loc-Mir-124-P4-v1  Loc-Mir-124-P4-v2  Mal-Mir-124-P4-v1  Mal-Mir-124-P4-v2  Mun-Mir-124-P4-v1  Mun-Mir-124-P4-v2  Npo-Mir-124  Oan-Mir-124-P4-v1  Oan-Mir-124-P4-v2  Obi-Mir-124  Ovu-Mir-124  Pfl-Mir-124  Pmi-Mir-124  Sko-Mir-124  Spt-Mir-124-P4  Spu-Mir-124  Sto-Mir-124-P4-v1  Sto-Mir-124-P4-v2  Tca-Mir-124  Tni-Mir-124-P4-v1  Tni-Mir-124-P4-v2  Xbo-Mir-124 
Node of Origin (locus) P. bivittatus
Node of Origin (family) Bilateria
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE955369.1: 120652-120711 [+]
Clustered miRNAs
(< 50kb from Mir-124-P4a)
Mir-124-P4b-v1 KE955369.1: 120833-120892 [+]
Mir-124-P4b-v2 KE955369.1: 120833-120891 [+]
Precursor
(pre-Mir +30nt flank)
CUUUUCUUCCCCCGCUUGGCUUAAGCCCUUCGUGUUCACAGCGGACCUUGAUUUAAUUUCGAUACAAUUAAGGCACGCGGUGAAUGCAAAGAGAGAAGCCACGUCCAGCCUCUCCUCNNN
Get precursor sequence
Structure
        10           20        30        40        50         
CUUUUCUUCCCCCGCUU---|    AAGCC   C        A   GA       UUAAUU 
                    GGCUU     CUU GUGUUCAC GCG  CCUUGAU      U
                    CCGAA     GAA CGUAAGUG CGC  GGAAUUA      C
NNNCUCCUCUCCGACCUGCA^    GAGA-   A        G   AC       ACAUAG 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Pbv-Mir-124-P4a_5p*

mirBase accessionNone
Sequence
0- CGUGUUCACAGCGGACCUUGAU -22
Get sequence
Mature sequence

Pbv-Mir-124-P4a_3p

mirBase accessionNone
Sequence
38- UAAGGCACGCGGUGAAUGCAAA -60
Get sequence