MirGeneDB 3.0
MirGeneDB ID

Spt-Mir-124-P3f

Family name MIR-124 (all species)
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-124-P1  Spt-Mir-124-P2  Spt-Mir-124-P3e  Spt-Mir-124-P4 
Orthologues Aae-Mir-124  Aca-Mir-124-P3-v1  Aga-Mir-124  Agr-Mir-124  Ami-Mir-124-P3-v1  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bko-Mir-124  Bla-Mir-124  Bpl-Mir-124  Bta-Mir-124-P3-v1  Cel-Mir-124  Cfa-Mir-124-P3-v1  Cja-Mir-124-P3-v1  Cli-Mir-124-P3-v1  Cmi-Mir-124-P3-v1  Cpi-Mir-124-P3-v1  Cpo-Mir-124-P3-v1  Cte-Mir-124  Dan-Mir-124  Dlo-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dno-Mir-124-P3-v1  Dpu-Mir-124  Dsi-Mir-124  Dya-Mir-124  Eba-Mir-124  Eca-Mir-124-P3-v1  Esc-Mir-124  Gga-Mir-124-P3-v1  Gja-Mir-124-P3-v1  Gpa-Mir-124  Gsp-Mir-124  Hme-Mir-124  Hru-Mir-124  Hsa-Mir-124-P3-v1  Isc-Mir-124  Laf-Mir-124-P3-v1  Lan-Mir-124  Lch-Mir-124-P3  Lhy-Mir-124  Llo-Mir-124  Loc-Mir-124-P3-v1  Mdo-Mir-124-P3-v1  Mgi-Mir-124  Mml-Mir-124-P3-v1  Mmr-Mir-124-P3-v1  Mmu-Mir-124-P3-v1  Mom-Mir-124  Mun-Mir-124-P3-v1  Neu-Mir-124-P3-v1  Npo-Mir-124  Oan-Mir-124-P3-v1  Obi-Mir-124  Ocu-Mir-124-P3-v1  Ofu-Mir-124  Ovu-Mir-124  Pab-Mir-124-P3-v1  Pau-Mir-124  Pbv-Mir-124-P3-v1  Pdu-Mir-124  Pfl-Mir-124  Pma-Mir-124-o3  Pmi-Mir-124  Pve-Mir-124  Rno-Mir-124-P3-v1  Sha-Mir-124-P3-v1  Sko-Mir-124  Sma-Mir-124  Sne-Mir-124  Snu-Mir-124  Spu-Mir-124  Sro-Mir-124  Sto-Mir-124-P3-v1  Tca-Mir-124  Tgu-Mir-124-P3-v1  War-Mir-124  Xbo-Mir-124  Xtr-Mir-124-P3-v1 
Node of Origin (locus) S. punctatus
Node of Origin (family) Bilateria
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)		 QEPC01009477.1: 6868664-6868723 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-124-P3f)		 Mir-124-P3e QEPC01009477.1: 6861521-6861580 [+] UCSC Ensembl
Mir-124-P3f QEPC01009477.1: 6868664-6868723 [+] UCSC Ensembl
Seed AAGGCAC
Precursor
(pre-Mir +30nt flank)		 
CCGGCCCGCAGUAACCCGAGCCCUUCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGGGAGCGGCCUCACAGCUUCAUUUUCAUGC
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Structure
        10          20         30        40        50         
CCGGCCCGCAGUAACCC-  -   -|   UC  C        A   GA       UUAAUG 
                  GA GCC CUUC  UG GUGUUCAC GCG  CCUUGAU      U
                  CU CGG GAGG  AC CGUAAGUG CGC  GGAAUUA      C
CGUACUUUUACUUCGACA  C   C^   GA  -        G   AC       ACAUAC 
.       110       100        90         80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Spt-Mir-124-P3f_5p* (predicted)
mirBase accessionNone
Sequence 
0- CGUGUUCACAGCGGACCUUGAU -22
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Mature sequence

Spt-Mir-124-P3f_3p (predicted)
mirBase accessionNone
Sequence 
38- UAAGGCACGCGGUGAAUGCCAA -60
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