Mir-124-o3

MirGeneDB ID

Pma-Mir-124-o3

Family name

MIR-124 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

Paralogues

Pma-Mir-124-o1 Pma-Mir-124-o2

Orthologues

Aae-Mir-124 Aca-Mir-124-P3-v1 Aga-Mir-124 Agr-Mir-124 Ami-Mir-124-P3-v1 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Bta-Mir-124-P3-v1 Cel-Mir-124 Cfa-Mir-124-P3-v1 Cja-Mir-124-P3-v1 Cli-Mir-124-P3-v1 Cmi-Mir-124-P3-v1 Cpi-Mir-124-P3-v1 Cpo-Mir-124-P3-v1 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dno-Mir-124-P3-v1 Dpu-Mir-124 Dre-Mir-124-P3a-v1 Dre-Mir-124-P3b-v1 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Eca-Mir-124-P3-v1 Esc-Mir-124 Gga-Mir-124-P3-v1 Gja-Mir-124-P3-v1 Gmo-Mir-124-P3a-v1 Gmo-Mir-124-P3b-v1 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Hsa-Mir-124-P3-v1 Isc-Mir-124 Laf-Mir-124-P3-v1 Lan-Mir-124 Lch-Mir-124-P3 Lhy-Mir-124 Llo-Mir-124 Loc-Mir-124-P3-v1 Mal-Mir-124-P3a-v1 Mal-Mir-124-P3b-v1 Mdo-Mir-124-P3-v1 Mgi-Mir-124 Mml-Mir-124-P3-v1 Mmr-Mir-124-P3-v1 Mmu-Mir-124-P3-v1 Mom-Mir-124 Mun-Mir-124-P3-v1 Neu-Mir-124-P3-v1 Npo-Mir-124 Oan-Mir-124-P3-v1 Obi-Mir-124 Ocu-Mir-124-P3-v1 Ofu-Mir-124 Ovu-Mir-124 Pab-Mir-124-P3-v1 Pau-Mir-124 Pbv-Mir-124-P3-v1 Pdu-Mir-124 Pfl-Mir-124 Pmi-Mir-124 Pve-Mir-124 Rno-Mir-124-P3-v1 Sha-Mir-124-P3-v1 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spt-Mir-124-P3e Spt-Mir-124-P3f Spu-Mir-124 Sro-Mir-124 Sto-Mir-124-P3-v1 Tca-Mir-124 Tgu-Mir-124-P3-v1 War-Mir-124 Xbo-Mir-124 Xla-Mir-124-P3c-v1 Xla-Mir-124-P3d-v1 Xtr-Mir-124-P3-v1

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046080.1: 14825366-14825425 [-] UCSC Ensembl

Seed

AAGGCAC

Precursor
(pre-Mir +30nt flank)

CCCCCCCACCGGCGCGAGCGUUCUGCUCUUCGUGUUCACGGCGCUCCUUGAUUUAAUAUUCAGACAAUUAAGGCACGCGGUGAAUGCCAAUAGCGGCGUGCAACUACCACCACCACCACC

Get precursor sequence

Structure

        10          20        30        40        50         
CCCCCCCACCGGCGCGA--|  UU     C  C        G   CU       UUAAUA 
                   GCG  CUGCU UU GUGUUCAC GCG  CCUUGAU      U
                   CGU  GGCGA AA CGUAAGUG CGC  GGAAUUA      U
CCACCACCACCACCAUCAA^  GC     U  C        G   AC       ACAGAC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-124-o3_5p*

mirBase accession

None

Sequence

0- CGUGUUCACGGCGCUCCUUGAU -22

Get sequence

Mature sequence

Pma-Mir-124-o3_3p

mirBase accession

None

Sequence

38- UAAGGCACGCGGUGAAUGCCAA -60

Get sequence