Mir-124-P46

MirGeneDB ID

Tur-Mir-124-P46

Family name

MIR-124 (all species)

Species

Two-spotted spider mite (Tetranychus urticae)

MiRBase ID

tur-mir-124-1

Paralogues

Tur-Mir-124-P47

Orthologues

Aae-Mir-124 Aga-Mir-124 Agr-Mir-124 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Cel-Mir-124 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dpu-Mir-124 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Esc-Mir-124 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Isc-Mir-124 Lan-Mir-124 Lhy-Mir-124 Llo-Mir-124 Mgi-Mir-124 Mom-Mir-124 Npo-Mir-124 Obi-Mir-124 Ofu-Mir-124 Ovu-Mir-124 Pau-Mir-124 Pdu-Mir-124 Pfl-Mir-124 Pmi-Mir-124 Pve-Mir-124 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spu-Mir-124 Sro-Mir-124 Tca-Mir-124 War-Mir-124 Xbo-Mir-124

Node of Origin (locus)

T. urticae

Node of Origin (family)

Bilateria

Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)

HE587309.1: 2159035-2159097 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-124-P46)

Mir-124-P46 HE587309.1: 2159035-2159097 [+] Ensembl
Mir-124-P47 HE587309.1: 2159846-2159908 [+] Ensembl

Seed

AAGGCAC

Precursor
(pre-Mir +30nt flank)

AUGUCAUGUUAUUGUCAUUGCCAUACUCUCCGUGUUCACUGUGUAUGUCUUGAUGUUUCCUUUGAUUAUCAUAAGGCACGCGGUGAAUGCCAAGAGUUGUGGUUAUCUUAUUGAUAUGGACAU

Get precursor sequence

Structure

        10         20         30        40        50        60  
AUGUCAUGUUAUUGUCAUU-     -|    CC             AU      A  UUUCCU 
                    GCCAU ACUCU  GUGUUCACUGUGU  GUCUUG UG      U
                    UGGUG UGAGA  CGUAAGUGGCGCA  CGGAAU AC      U
UACAGGUAUAGUUAUUCUAU     U^    AC             --      -  UAUUAG 
 120       110       100        90        80           70