MirGeneDB 2.1

MirGeneDB ID

Cin-Mir-124-P8

Family name MIR-124 (all species)
Seed AAGGCAC
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-124-1
Paralogues Cin-Mir-124-P7 
Orthologues Aae-Mir-124  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bla-Mir-124  Cel-Mir-124  Cte-Mir-124  Dan-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dsi-Mir-124  Dya-Mir-124  Esc-Mir-124  Hme-Mir-124  Isc-Mir-124  Lan-Mir-124  Npo-Mir-124  Obi-Mir-124  Ovu-Mir-124  Pfl-Mir-124  Pmi-Mir-124  Sko-Mir-124  Spu-Mir-124  Tca-Mir-124  Xbo-Mir-124 
Node of Origin (locus) C. intestinalis
Node of Origin (family) Bilateria
Genome context
(ci3)
7: 4969705-4969762 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-124-P8)
Mir-124-P8 7: 4969705-4969762 [-] UCSC Ensembl
Mir-124-P7 7: 4969845-4969902 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGACGUAAUAUUUAAAGGGCGCUUAUGAGUCGUGUUUACUGUGGACCUUGCUGUGUGACGUCACAAUAAGGCACGCGGUGAAUGCCAAUCAAAAGUCGCCGCUCGCUACAAGAAUGAA
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Structure
        10         20         30        40        50        
UGACGUAAUAUUUAAAG-    -|  A   GUC            GA     CUGUGUG 
                  GGCG CUU UGA   GUGUUUACUGUG  CCUUG       A
                  CCGC GAA ACU   CGUAAGUGGCGC  GGAAU       C
AAGUAAGAACAUCGCUCG    U^  A   AAC            AC     AACACUG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Star sequence

Cin-Mir-124-P8_5p*

mirBase accessionMIMAT0015256
Sequence
0- CGUGUUUACUGUGGACCUUGCU -22
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Mature sequence

Cin-Mir-124-P8_3p

mirBase accessionMIMAT0006100
Sequence
36- UAAGGCACGCGGUGAAUGCCAA -58
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