Mir-124-P8

MirGeneDB ID

Cin-Mir-124-P8

Family name

MIR-124 (all species)

Species

Sea Squirt (Ciona intestinalis)

MiRBase ID

cin-mir-124-1

Paralogues

Cin-Mir-124-P7

Orthologues

Aae-Mir-124 Aga-Mir-124 Agr-Mir-124 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Cel-Mir-124 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dpu-Mir-124 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Egr-Mir-124-o8 Esc-Mir-124 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Isc-Mir-124 Lan-Mir-124 Lhy-Mir-124 Llo-Mir-124 Mgi-Mir-124 Mom-Mir-124 Npo-Mir-124 Obi-Mir-124 Ofu-Mir-124 Ovu-Mir-124 Pau-Mir-124 Pdu-Mir-124 Pfl-Mir-124 Pmi-Mir-124 Pve-Mir-124 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spu-Mir-124 Sro-Mir-124 Tca-Mir-124 War-Mir-124 Xbo-Mir-124

Node of Origin (locus)

C. intestinalis

Node of Origin (family)

Bilateria

Genome context
(ci3)

7: 4969705-4969762 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-124-P8)

Mir-124-P8 7: 4969705-4969762 [-] UCSC Ensembl
Mir-124-P7 7: 4969845-4969902 [-] UCSC Ensembl

Seed

AAGGCAC

Precursor
(pre-Mir +30nt flank)

UGACGUAAUAUUUAAAGGGCGCUUAUGAGUCGUGUUUACUGUGGACCUUGCUGUGUGACGUCACAAUAAGGCACGCGGUGAAUGCCAAUCAAAAGUCGCCGCUCGCUACAAGAAUGAA

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Structure

        10         20         30        40        50        
UGACGUAAUAUUUAAAG-    -|  A   GUC            GA     CUGUGUG 
                  GGCG CUU UGA   GUGUUUACUGUG  CCUUG       A
                  CCGC GAA ACU   CGUAAGUGGCGC  GGAAU       C
AAGUAAGAACAUCGCUCG    U^  A   AAC            AC     AACACUG 
      110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

C-	C-	C-	C-	C-	C-	C-	C-	C-	C-	Ga	La	La

Star sequence

Cin-Mir-124-P8_5p*

mirBase accession

MIMAT0015256

Sequence

0- CGUGUUUACUGUGGACCUUGCU -22

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Mature sequence

Cin-Mir-124-P8_3p

mirBase accession

MIMAT0006100

Sequence

36- UAAGGCACGCGGUGAAUGCCAA -58

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