MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-124-P2a

Family name MIR-124 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-124-2
Paralogues Dre-Mir-124-P1a-v1  Dre-Mir-124-P1b-v1  Dre-Mir-124-P3a-v1  Dre-Mir-124-P3b-v1  Dre-Mir-124-P4-v1 
Orthologues Aae-Mir-124  Aca-Mir-124-P2-v1  Aga-Mir-124  Agr-Mir-124  Ami-Mir-124-P2-v1  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bko-Mir-124  Bla-Mir-124  Bpl-Mir-124  Bta-Mir-124-P2-v1  Cel-Mir-124  Cfa-Mir-124-P2-v1  Cja-Mir-124-P2-v1  Cmi-Mir-124-P2-v1  Cpi-Mir-124-P2-v1  Cpo-Mir-124-P2-v1  Cte-Mir-124  Dan-Mir-124  Dlo-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dno-Mir-124-P2-v1  Dpu-Mir-124  Dsi-Mir-124  Dya-Mir-124  Eba-Mir-124  Eca-Mir-124-P2-v1  Esc-Mir-124  Ete-Mir-124-P2-v1  Gga-Mir-124-P2-v1  Gja-Mir-124-P2-v1  Gpa-Mir-124  Gsp-Mir-124  Hme-Mir-124  Hru-Mir-124  Hsa-Mir-124-P2-v1  Isc-Mir-124  Laf-Mir-124-P2-v1  Lan-Mir-124  Lch-Mir-124-P2  Lhy-Mir-124  Llo-Mir-124  Loc-Mir-124-P2-v1  Mal-Mir-124-P2a-v1  Mdo-Mir-124-P2-v1  Mgi-Mir-124  Mml-Mir-124-P2-v1  Mmr-Mir-124-P2-v1  Mmu-Mir-124-P2-v1  Mom-Mir-124  Mun-Mir-124-P2-v1  Neu-Mir-124-P2-v1  Npo-Mir-124  Obi-Mir-124  Ocu-Mir-124-P2-v1  Ofu-Mir-124  Ovu-Mir-124  Pab-Mir-124-P2-v1  Pau-Mir-124  Pbv-Mir-124-P2-v1  Pdu-Mir-124  Pfl-Mir-124  Pma-Mir-124-o2  Pmi-Mir-124  Pve-Mir-124  Rno-Mir-124-P2-v1  Sha-Mir-124-P2-v1  Sko-Mir-124  Sma-Mir-124  Sne-Mir-124  Snu-Mir-124  Spt-Mir-124-P2  Spu-Mir-124  Sro-Mir-124  Sto-Mir-124-P2-v1  Tca-Mir-124  Tgu-Mir-124-P2-v1  Tni-Mir-124-P2a-v1  War-Mir-124  Xbo-Mir-124  Xtr-Mir-124-P2-v1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr20: 38905541-38905601 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-124-P2a-v1)		 Mir-124-P2a-v1 chr20: 38905541-38905601 [-] UCSC Ensembl
Mir-124-P2a-v2 chr20: 38905542-38905601 [-] UCSC Ensembl
Variant

Dre-Mir-124-P2a-v1
Seed AAGGCAC
Precursor
(pre-Mir +30nt flank)		 
UUUGGGGUUGAAAACGGGCCUGCUUUUCUUCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAUGGCAAAUAUCAUCGACGAGUGUG
Get precursor sequence
Structure
        10           20        30        40        50          
UUUGGGGUUGAAAACGG---|  UGC       C        A   GA       UUAAAUG 
                    GCC   UUUUCUU GUGUUCAC GCG  CCUUGAU       \
                    CGG   GAGAGAA CGUAAGUG CGC  GGAAUUA       U
GUGUGAGCAGCUACUAUAAA^  UA-       C        G   AC       ACAUACC 
 .       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-124-P2a-v1_5p*
mirBase accessionMIMAT0031960
Sequence 
0- CGUGUUCACAGCGGACCUUGAU -22
Get sequence
Mature sequence

Dre-Mir-124-P2a-v1_3p
mirBase accessionMIMAT0001819
Sequence 
39- UAAGGCACGCGGUGAAUGCCAA -61
Get sequence
Proposed targets TargetScanFish: dre-miR-124
Variant

Dre-Mir-124-P2a-v2
Seed UAAGGCA
Precursor
(pre-Mir +30nt flank)		 
UUUGGGGUUGAAAACGGGCCUGCUUUUCUUCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAUGGCAAAUAUCAUCGACGAGUGU
Get precursor sequence
Structure
        10          20        30        40        50          
UUUGGGGUUGAAAACGG--|  UGC       C        A   GA        UAAAUG 
                   GCC   UUUUCUU GUGUUCAC GCG  CCUUGAUU      \
                   CGG   GAGAGAA CGUAAGUG CGC  GGAAUUAA      U
UGUGAGCAGCUACUAUAAA^  UA-       C        G   AC        CAUACC 
.       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-124-P2a-v2_5p*
mirBase accessionMIMAT0031960
Sequence 
0- CGUGUUCACAGCGGACCUUGAUU -23
Get sequence
Mature sequence

Dre-Mir-124-P2a-v2_3p
mirBase accessionMIMAT0001819
Sequence 
38- UUAAGGCACGCGGUGAAUGCCA -60
Get sequence
Proposed targets TargetScanFish: dre-miR-124