Mir-124-P2-v1

MirGeneDB ID

Cpo-Mir-124-P2

Family name

MIR-124 (all species)

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-124-1

Paralogues

Cpo-Mir-124-P1-v1 Cpo-Mir-124-P3-v1

Orthologues

Aae-Mir-124 Aca-Mir-124-P2-v1 Aga-Mir-124 Agr-Mir-124 Ami-Mir-124-P2-v1 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Bta-Mir-124-P2-v1 Cel-Mir-124 Cfa-Mir-124-P2-v1 Cja-Mir-124-P2-v1 Cmi-Mir-124-P2-v1 Cpi-Mir-124-P2-v1 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dno-Mir-124-P2-v1 Dpu-Mir-124 Dre-Mir-124-P2a-v1 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Eca-Mir-124-P2-v1 Esc-Mir-124 Ete-Mir-124-P2-v1 Gga-Mir-124-P2-v1 Gja-Mir-124-P2-v1 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Hsa-Mir-124-P2-v1 Isc-Mir-124 Laf-Mir-124-P2-v1 Lan-Mir-124 Lch-Mir-124-P2 Lhy-Mir-124 Llo-Mir-124 Loc-Mir-124-P2-v1 Mal-Mir-124-P2a-v1 Mdo-Mir-124-P2-v1 Mgi-Mir-124 Mml-Mir-124-P2-v1 Mmr-Mir-124-P2-v1 Mmu-Mir-124-P2-v1 Mom-Mir-124 Mun-Mir-124-P2-v1 Neu-Mir-124-P2-v1 Npo-Mir-124 Obi-Mir-124 Ocu-Mir-124-P2-v1 Ofu-Mir-124 Ovu-Mir-124 Pab-Mir-124-P2-v1 Pau-Mir-124 Pbv-Mir-124-P2-v1 Pdu-Mir-124 Pfl-Mir-124 Pma-Mir-124-o2 Pmi-Mir-124 Pve-Mir-124 Rno-Mir-124-P2-v1 Sha-Mir-124-P2-v1 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spt-Mir-124-P2 Spu-Mir-124 Sro-Mir-124 Sto-Mir-124-P2-v1 Tca-Mir-124 Tgu-Mir-124-P2-v1 Tni-Mir-124-P2a-v1 Tni-Mir-124-P2b-v1 War-Mir-124 Xbo-Mir-124 Xla-Mir-124-P2c-v1 Xla-Mir-124-P2d-v1 Xtr-Mir-124-P2-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(cavPor3)

scaffold_1: 66413101-66413161 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-124-P2-v1)

Mir-124-P2-v1 scaffold_1: 66413101-66413161 [+] UCSC
Mir-124-P2-v2 scaffold_1: 66413101-66413160 [+] UCSC

Variant

Cpo-Mir-124-P2-v1

Seed

AAGGCAC

Precursor
(pre-Mir +30nt flank)

UUCCUUCCUCAGGAUAAAGGCCUCUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAAUGGGGCUGGCUGAGCACCAUGGGCCGA

Get precursor sequence

Structure

        10          20        30        40        50          
UUCCUUCCUCAGGAUAAA--|     UC   CC        A   GA       UUAAAUG 
                    GGCCUC  UCU  GUGUUCAC GCG  CCUUGAU       \
                    UCGGGG  AGA  CGUAAGUG CGC  GGAAUUA       U
AGCCGGGUACCACGAGUCGG^     UA   AC        G   AC       ACAUACC 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Star sequence

Cpo-Mir-124-P2-v1_5p*

mirBase accession

MIMAT0046963

Sequence

0- CGUGUUCACAGCGGACCUUGAU -22

Get sequence

Mature sequence

Cpo-Mir-124-P2-v1_3p