Mir-124-P20

MirGeneDB ID

Lpo-Mir-124-P20

Family name

MIR-124 (all species)

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-124-P19 Lpo-Mir-124-P21 Lpo-Mir-124-P22 Lpo-Mir-124-P23 Lpo-Mir-124-P24

Orthologues

Aae-Mir-124 Aga-Mir-124 Agr-Mir-124 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Cel-Mir-124 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dpu-Mir-124 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Esc-Mir-124 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Isc-Mir-124 Lan-Mir-124 Lhy-Mir-124 Llo-Mir-124 Mgi-Mir-124 Mom-Mir-124 Npo-Mir-124 Obi-Mir-124 Ofu-Mir-124 Ovu-Mir-124 Pau-Mir-124 Pdu-Mir-124 Pfl-Mir-124 Pmi-Mir-124 Pve-Mir-124 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spu-Mir-124 Sro-Mir-124 Tca-Mir-124 War-Mir-124 Xbo-Mir-124

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Bilateria

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013694253.1: 345-403 [-] Ensembl

Seed

AAGGCAC

Precursor
(pre-Mir +30nt flank)

CAAGGAUUUUGAAGUAAUUGUCUGACUCUCCGUGUUCACUGUUGGCCUUGAUGUGUUGUUAGAACCAUAAGGCACGCGGUGAAUGCCAAGAGGAAGCCUCGAGAACAGCCGUGAAGAAU

Get precursor sequence

Structure

        10        20          30        40        50         
CAAGGAUUUUGAAGUAAUUGU--| GA    CC           UG      A  UGUUG 
                       CU  CUCU  GUGUUCACUGU  GCCUUG UG     U
                       GA  GAGA  CGUAAGUGGCG  CGGAAU AC     U
UAAGAAGUGCCGACAAGAGCUCC^ AG    AC           CA      -  CAAGA 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-124-P20_5p* (predicted)

mirBase accession

None

Sequence

0- CGUGUUCACUGUUGGCCUUGAUG -23

Get sequence

Mature sequence

Lpo-Mir-124-P20_3p

mirBase accession

None

Sequence

37- UAAGGCACGCGGUGAAUGCCAA -59

Get sequence