| MirGeneDB ID | Bfl-Mir-4874 |
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| Family name |
MIR-4874 (all species) |
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| Seed |
GUUUGUA |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
bfl-mir-4874
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| Paralogues |
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| Orthologues |
Bla-Mir-4874
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| Node of Origin (locus) |
Branchiostoma
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| Node of Origin (family) |
Branchiostoma
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049983.1: 19101237-19101297 [-]
UCSC
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Precursor
(pre-Mir +30nt flank) |
GAGAUAGGCAUUGCCGUUUUAUCCCCGCCCAGUUUGUAGCAUCCAGCUGAGCUGGCAGACCUGCAGCAGCUGGCUGGUUGGUGCAAACAGGGGGAGGAUGGACCUCACUUCAAGGCCAGCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GAGAUAGGCAUUGCCGU-- -| G A G U G GGCAGA
UUUAUCC CC CCC GUUUGUA CA CCAGCU AGCU C
AGGUAGG GG GGG CAAACGU GU GGUCGG UCGA C
CCGACCGGAACUUCACUCC A^ - A G U - CGACGU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Bfl-Mir-4874_5p |
| mirBase accession | MIMAT0020453 |
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| Sequence |
0- AGUUUGUAGCAUCCAGCUGAGCU -23
Get sequence
|
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| Co-mature sequence |
Bfl-Mir-4874_3p |
| mirBase accession | MIMAT0020454 |
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| Sequence |
39- CUGGCUGGUUGGUGCAAACAGG -61
Get sequence
|
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