| MirGeneDB ID | Bfl-Mir-4881 |
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| Family name |
MIR-4881 (all species) |
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| Seed |
CUAUUUG |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
bfl-mir-4881
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
B. floridae
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| Node of Origin (family) |
B. floridae
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049989.1: 11513754-11513816 [-]
UCSC
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Precursor
(pre-Mir +30nt flank) |
AGGCUUUGUAAAUCAUAUGUCACUGGAAAUAGUAGAAAUUUGCCAAAGUAGUGUGUUAAUUAACUUUCAGUCUAUUUGGCCAAUUUCUACUUUUUCCAGCGACUCCUACAUCUACAUCUACGU
Get precursor sequence
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| Structure | 10 20 30 40 50 60
AGGCUUUGUAAAUCAUAU--| A U U G UGUGUUAAU
GUC CUGGAAA AGUAGAAAUU GCCAAA UAG U
CAG GACCUUU UCAUCUUUAA CGGUUU AUC A
UGCAUCUACAUCUACAUCCU^ C U C - UGACUUUCA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Bfl-Mir-4881_5p* |
| mirBase accession | MIMAT0020464 |
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| Sequence |
0- AGUAGAAAUUUGCCAAAGUAGUGU -24
Get sequence
|
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| Mature sequence |
Bfl-Mir-4881_3p |
| mirBase accession | None |
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| Sequence |
40- UCUAUUUGGCCAAUUUCUACUUU -63
Get sequence
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