| MirGeneDB ID | Bfl-Mir-2071 |
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| Family name |
MIR-2071 (all species) |
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| Seed |
UUGUUAC |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
bfl-mir-2071
|
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| Paralogues |
|
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| Orthologues |
Bla-Mir-2071
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Branchiostoma
|
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049982.1: 18526440-18526501 [+]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
AACCACGGCCCCAUUCUCCGCAGGUUGAAUAUGCGGUGCGGUGGUAGCAACCGUCCCGACGUAAAGUCGAUUGUUACACCGCGCCGCAAAAGUUGACCUGGCGGCCUAUAACAACCAACAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AACCACGGCCCCAUUCU- - UG AUA-| G C UCCCGA
CCG CAGGU A UGCGGUGCGGUG UAGCAA CG C
GGC GUCCA U ACGCCGCGCCAC AUUGUU GC G
CGACAACCAACAAUAUCC G GU GAAA^ - A UGAAAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Bfl-Mir-2071_5p* |
| mirBase accession | MIMAT0019172 |
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| Sequence |
0- AUGCGGUGCGGUGGUAGCAACCG -23
Get sequence
|
|---|
| Mature sequence |
Bfl-Mir-2071_3p |
| mirBase accession | MIMAT0009999 |
|---|
| Sequence |
39- AUUGUUACACCGCGCCGCAAAAG -62
Get sequence
|
|---|
