MirGeneDB 2.1
MirGeneDB ID

Bfl-Mir-219

Family name MIR-219 (all species)
Seed GAUUGUC
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-219
Paralogues
Orthologues Aae-Mir-219  Aca-Mir-219-P2  Aca-Mir-219-P3  Ami-Mir-219-P2  Ami-Mir-219-P3  Bge-Mir-219  Bla-Mir-219  Bta-Mir-219-P2  Bta-Mir-219-P2-as  Bta-Mir-219-P3  Cfa-Mir-219-P2  Cfa-Mir-219-P2-as  Cfa-Mir-219-P3  Cgi-Mir-219  Cin-Mir-219  Cli-Mir-219-P2  Cmi-Mir-219-P2  Cmi-Mir-219-P3  Cpi-Mir-219-P2  Cpi-Mir-219-P3  Cpo-Mir-219-P2  Cpo-Mir-219-P2-as  Cpo-Mir-219-P3  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P2  Dno-Mir-219-P2-as  Dno-Mir-219-P3  Dpu-Mir-219  Dre-Mir-219-P2a  Dre-Mir-219-P2b  Dre-Mir-219-P3a  Dsi-Mir-219  Dya-Mir-219  Ebu-Mir-219-P5  Ebu-Mir-219-P6  Efe-Mir-219-P7  Efe-Mir-219-P8  Efe-Mir-219-P9  Esc-Mir-219  Ete-Mir-219-P2  Ete-Mir-219-P3  Gga-Mir-219-P2  Gja-Mir-219-P2  Gja-Mir-219-P3  Gmo-Mir-219-P2a  Gmo-Mir-219-P3a  Gmo-Mir-219-P3b  Hsa-Mir-219-P2  Hsa-Mir-219-P2-as  Hsa-Mir-219-P3  Isc-Mir-219  Lan-Mir-219  Lch-Mir-219-P2  Lch-Mir-219-P3  Loc-Mir-219-P2  Lpo-Mir-219-P20  Lpo-Mir-219-P21  Lpo-Mir-219-P22  Lpo-Mir-219-P23  Lpo-Mir-219-P24  Mal-Mir-219-P2a  Mal-Mir-219-P2b  Mal-Mir-219-P3a  Mal-Mir-219-P3b  Mdo-Mir-219-P2  Mdo-Mir-219-P3  Mml-Mir-219-P2  Mml-Mir-219-P2-as  Mml-Mir-219-P3  Mmu-Mir-219-P2  Mmu-Mir-219-P2-as  Mmu-Mir-219-P3  Mmu-Mir-219-P3-as  Mun-Mir-219-P2  Mun-Mir-219-P3-v1  Mun-Mir-219-P3-v2  Oan-Mir-219-P2  Obi-Mir-219  Ocu-Mir-219-P2  Ocu-Mir-219-P2-as  Ocu-Mir-219-P3  Ovu-Mir-219  Pbv-Mir-219-P2  Pbv-Mir-219-P3  Pfl-Mir-219  Pma-Mir-219-o1  Pma-Mir-219-o2  Pmi-Mir-219  Rno-Mir-219-P2  Rno-Mir-219-P2-as  Rno-Mir-219-P3  Sha-Mir-219-P2  Sha-Mir-219-P3  Sko-Mir-219  Sme-Mir-219-P10  Sme-Mir-219-P11  Spt-Mir-219-P2  Spt-Mir-219-P3  Spu-Mir-219  Sto-Mir-219-P2  Sto-Mir-219-P3-v1  Sto-Mir-219-P3-v2  Tca-Mir-219  Tgu-Mir-219-P2  Tni-Mir-219-P2a  Tni-Mir-219-P2b  Tni-Mir-219-P3a  Tni-Mir-219-P3b  Xbo-Mir-219  Xla-Mir-219-P2c  Xla-Mir-219-P2d  Xtr-Mir-219-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049986.1: 24495117-24495175 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CGUUGCCCGGAGACCCGCGGUGUCCAGUGCUGAUUGUCCAAACGCAAUUCUUGUUGACCUUUGAACCAAGAACUGCGCUGGACAUCAGCAAUUGACGCUGCCUACUCGACGUCCGGAAU
Get precursor sequence
Structure
        10          20        30        40        50          
CGUUGCCCGGAGACCCG--|      CAG       U     AA    A      UUGACC 
                   CGGUGUC   UGCUGAU GUCCA  CGCA UUCUUG      \
                   GUCGCAG   ACGACUA CAGGU  GCGU AAGAAC      U
UAAGGCCUGCAGCUCAUCC^      UUA       -     C-    C      CAAGUU 
       110       100        90         80         70
Deep sequencing
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CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Bfl-Mir-219_5p
mirBase accessionMIMAT0010012
Sequence 
0- UGAUUGUCCAAACGCAAUUCUUGU -24
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Co-mature sequence

Bfl-Mir-219_3p (predicted)
mirBase accessionNone
Sequence 
37- AAGAACUGCGCUGGACAUCAGC -59
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