MirGeneDB

MirGeneDB ID

Rno-Mir-219-P2

Family name MIR-219 (all species)
Seed GAUUGUC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-219a-2
Paralogues Rno-Mir-219-P1  Rno-Mir-219-P2-as 
Orthologues Aae-Mir-219  Aca-Mir-219-P2  Ami-Mir-219-P2  Bfl-Mir-219  Bge-Mir-219  Bta-Mir-219-P2  Bta-Mir-219-P2-as  Cfa-Mir-219-P2  Cfa-Mir-219-P2-as  Cgi-Mir-219  Cin-Mir-219  Cli-Mir-219-P2  Cpi-Mir-219-P2  Cpo-Mir-219-P2  Cpo-Mir-219-P2-as  Cte-Mir-219  Dan-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P2  Dno-Mir-219-P2-as  Dpu-Mir-219  Dre-Mir-219-P2a  Dre-Mir-219-P2b  Ete-Mir-219-P2  Gga-Mir-219-P2  Hsa-Mir-219-P2  Hsa-Mir-219-P2-as  Isc-Mir-219  Lan-Mir-219  Mdo-Mir-219-P2  Mml-Mir-219-P2  Mml-Mir-219-P2-as  Mmu-Mir-219-P2  Mmu-Mir-219-P2-as  Oan-Mir-219-P2  Ocu-Mir-219-P2  Ocu-Mir-219-P2-as  Pfl-Mir-219  Pmi-Mir-219  Sha-Mir-219-P2  Sko-Mir-219  Spu-Mir-219  Sto-Mir-219-P2  Tca-Mir-219  Tgu-Mir-219-P2  Xtr-Mir-219-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(rn6)
chr3: 8407443-8407507 [-] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-219-P2)
Mir-219-P2 chr3: 8407443-8407507 [-] UCSC Ensembl
Mir-219-P2-as chr3: 8407445-8407509 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGGAGCCCUGAACUCAGGGGCUUCACCACUGAUUGUCCAAACGCAAUUCUUGUACGAGUCUGCGGCCAACCGAGAAUUGUGGCUGGACAUCUGUGGUUGAGCUCCGGUCUCAACAGAGACGGGG
Get precursor sequence
Structure
        10          20        30        40        50        60  
CCGGAGCCCUGAACUCA--|      C     U   U     AA           UACGAGUC 
                   GGGGCUU ACCAC GAU GUCCA  CGCAAUUCUUG        U
                   CCUCGAG UGGUG CUA CAGGU  GUGUUAAGAGC        G
GGGGCAGAGACAACUCUGG^      U     U   -     CG           CAACCGGC 
   120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-219-P2_5p

MirBase accessionMIMAT0000889
Sequence
0- UGAUUGUCCAAACGCAAUUCUUG -23
Get sequence
Validated targets microrna.org: MIMAT0000889
TargetScanVert: rno-miR-219a-5p
miRDB: MIMAT0000889
Star sequence

Rno-Mir-219-P2_3p*

MirBase accessionMIMAT0005446
Sequence
43- AGAAUUGUGGCUGGACAUCUGU -65
Get sequence
Validated targets microrna.org: MIMAT0005446
TargetScanVert: rno-miR-219a-2-3p
miRDB: MIMAT0005446