MirGeneDB

MirGeneDB ID

Cpo-Mir-219-P2-as

Family name MIR-219 (all species)
Seed AGAAUUG
Species Guinea pig (Cavia porcellus)
MiRBase ID
Paralogues Cpo-Mir-219-P1  Cpo-Mir-219-P2 
Orthologues Aae-Mir-219  Aca-Mir-219-P2  Ami-Mir-219-P2  Bfl-Mir-219  Bge-Mir-219  Bta-Mir-219-P2  Bta-Mir-219-P2-as  Cfa-Mir-219-P2  Cfa-Mir-219-P2-as  Cgi-Mir-219  Cin-Mir-219  Cli-Mir-219-P2  Cpi-Mir-219-P2  Cte-Mir-219  Dan-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P2  Dno-Mir-219-P2-as  Dpu-Mir-219  Dre-Mir-219-P2a  Dre-Mir-219-P2b  Ete-Mir-219-P2  Gga-Mir-219-P2  Hsa-Mir-219-P2  Hsa-Mir-219-P2-as  Isc-Mir-219  Lan-Mir-219  Mdo-Mir-219-P2  Mml-Mir-219-P2  Mml-Mir-219-P2-as  Mmu-Mir-219-P2  Mmu-Mir-219-P2-as  Oan-Mir-219-P2  Ocu-Mir-219-P2  Ocu-Mir-219-P2-as  Pfl-Mir-219  Pmi-Mir-219  Rno-Mir-219-P2  Rno-Mir-219-P2-as  Sha-Mir-219-P2  Sko-Mir-219  Spu-Mir-219  Sto-Mir-219-P2  Tca-Mir-219  Tgu-Mir-219-P2  Xtr-Mir-219-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Bilateria
Genome context
(cavPor3)
scaffold_27: 3805722-3805786 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UGGCCCCUGUUGCACCCGGGGCUCAACCACAGAUGUCCAGCCACAAUUCUCGGUUGGCCGCAGACUCGUACAAGAAUUGCGUUUGGACAAUCAGUGGCGAAGCUCCUGAGUUCAGGGCCCUGGGC
Get precursor sequence
Structure
        10          20        30         40        50        60 
UGGCCCCUGUUGCACCC--      CAA    A  -|      CCA       CGGUUGGCCG 
                   GGGGCU   CCAC GA UGUCCAG   CAAUUCU          C
                   CCUCGA   GGUG CU ACAGGUU   GUUAAGA          A
CGGGUCCCGGGACUUGAGU      AGC    A  A^      UGC       ACAUGCUCAG 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Cpo-Mir-219-P2-as_5p* (predicted)

MirBase accessionNone
Sequence
0- AGAUGUCCAGCCACAAUUCUCGG -23
Get sequence
Mature sequence

Cpo-Mir-219-P2-as_3p

MirBase accessionNone
Sequence
41- AAGAAUUGCGUUUGGACAAUCAGU -65
Get sequence