Mir-219-P2-as

MirGeneDB ID

Cpo-Mir-219-P2-as

Family name

MIR-219 (all species)

Species

Guinea pig (Cavia porcellus)

MiRBase ID

Paralogues

Cpo-Mir-219-P2 Cpo-Mir-219-P3

Orthologues

Aae-Mir-219 Aca-Mir-219-P2 Aga-Mir-219 Agr-Mir-219 Ami-Mir-219-P2 Bfl-Mir-219 Bge-Mir-219 Bko-Mir-219 Bla-Mir-219 Bpl-Mir-219 Bta-Mir-219-P2 Bta-Mir-219-P2-as Cfa-Mir-219-P2 Cfa-Mir-219-P2-as Cin-Mir-219 Cja-Mir-219-P2 Cli-Mir-219-P2 Cmi-Mir-219-P2 Cpi-Mir-219-P2 Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dgr-Mir-219 Dlo-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dno-Mir-219-P2 Dno-Mir-219-P2-as Dpu-Mir-219 Dre-Mir-219-P2a Dre-Mir-219-P2b Dsi-Mir-219 Dya-Mir-219 Eba-Mir-219 Eca-Mir-219-P2 Egr-Mir-219 Esc-Mir-219 Ete-Mir-219-P2 Gga-Mir-219-P2 Gja-Mir-219-P2 Gmo-Mir-219-P2a Gpa-Mir-219 Gsa-Mir-219 Gsp-Mir-219 Hmi-Mir-219 Hru-Mir-219 Hsa-Mir-219-P2 Hsa-Mir-219-P2-as Isc-Mir-219 Laf-Mir-219-P2 Lan-Mir-219 Lch-Mir-219-P2 Llo-Mir-219 Loc-Mir-219-P2 Mal-Mir-219-P2a Mal-Mir-219-P2b Mdo-Mir-219-P2 Mgi-Mir-219 Mml-Mir-219-P2 Mml-Mir-219-P2-as Mmr-Mir-219-P2 Mmu-Mir-219-P2 Mmu-Mir-219-P2-as Mom-Mir-219 Mun-Mir-219-P2 Neu-Mir-219-P2 Oan-Mir-219-P2 Obi-Mir-219 Ocu-Mir-219-P2 Ocu-Mir-219-P2-as Ofu-Mir-219 Ovu-Mir-219 Pab-Mir-219-P2 Pab-Mir-219-P2-as Pau-Mir-219 Pbv-Mir-219-P2 Pca-Mir-219 Pcr-Mir-219 Pfl-Mir-219 Pma-Mir-219-o2 Pmi-Mir-219 Pve-Mir-219 Rno-Mir-219-P2 Rno-Mir-219-P2-as Rph-Mir-219 Sha-Mir-219-P2 Sko-Mir-219 Sma-Mir-219 Sne-Mir-219 Snu-Mir-219 Spt-Mir-219-P2 Spu-Mir-219 Sro-Mir-219 Sto-Mir-219-P2 Tca-Mir-219 Tgu-Mir-219-P2 Tni-Mir-219-P2a Tni-Mir-219-P2b Tur-Mir-219 War-Mir-219 Xbo-Mir-219 Xla-Mir-219-P2c Xla-Mir-219-P2d Xtr-Mir-219-P2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Bilateria

Genome context
(cavPor3)

scaffold_27: 3805722-3805786 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-219-P2-as)

Mir-219-P2-as scaffold_27: 3805722-3805786 [-] UCSC
Mir-219-P2 scaffold_27: 3805724-3805788 [+] UCSC

Seed

AGAAUUG

Precursor
(pre-Mir +30nt flank)

UGGCCCCUGUUGCACCCGGGGCUCAACCACAGAUGUCCAGCCACAAUUCUCGGUUGGCCGCAGACUCGUACAAGAAUUGCGUUUGGACAAUCAGUGGCGAAGCUCCUGAGUUCAGGGCCCUGGGC

Get precursor sequence

Structure

        10          20        30         40        50        60 
UGGCCCCUGUUGCACCC--      CAA    A  -|      CCA       CGGUUGGCCG 
                   GGGGCU   CCAC GA UGUCCAG   CAAUUCU          C
                   CCUCGA   GGUG CU ACAGGUU   GUUAAGA          A
CGGGUCCCGGGACUUGAGU      AGC    A  A^      UGC       ACAUGCUCAG 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Star sequence

Cpo-Mir-219-P2-as_5p* (predicted)

mirBase accession

None

Sequence

0- AGAUGUCCAGCCACAAUUCUCGG -23

Get sequence

Mature sequence

Cpo-Mir-219-P2-as_3p

mirBase accession

None

Sequence

41- AAGAAUUGCGUUUGGACAAUCAGU -65

Get sequence