MirGeneDB ID | Xla-Mir-219-P2d |
Family name |
MIR-219 (all species) |
Seed |
GAUUGUC |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-219-P2c
|
Orthologues |
Aae-Mir-219
Aca-Mir-219-P2
Ami-Mir-219-P2
Bfl-Mir-219
Bge-Mir-219
Bla-Mir-219
Bta-Mir-219-P2
Bta-Mir-219-P2-as
Cfa-Mir-219-P2
Cfa-Mir-219-P2-as
Cgi-Mir-219
Cin-Mir-219
Cli-Mir-219-P2
Cmi-Mir-219-P2
Cpi-Mir-219-P2
Cpo-Mir-219-P2
Cpo-Mir-219-P2-as
Csc-Mir-219
Cte-Mir-219
Dan-Mir-219
Dma-Mir-219
Dme-Mir-219
Dmo-Mir-219
Dno-Mir-219-P2
Dno-Mir-219-P2-as
Dpu-Mir-219
Dsi-Mir-219
Dya-Mir-219
Esc-Mir-219
Ete-Mir-219-P2
Gga-Mir-219-P2
Gja-Mir-219-P2
Hsa-Mir-219-P2
Hsa-Mir-219-P2-as
Isc-Mir-219
Lan-Mir-219
Lch-Mir-219-P2
Loc-Mir-219-P2
Mdo-Mir-219-P2
Mml-Mir-219-P2
Mml-Mir-219-P2-as
Mmu-Mir-219-P2
Mmu-Mir-219-P2-as
Mun-Mir-219-P2
Oan-Mir-219-P2
Obi-Mir-219
Ocu-Mir-219-P2
Ocu-Mir-219-P2-as
Ovu-Mir-219
Pbv-Mir-219-P2
Pfl-Mir-219
Pma-Mir-219-o2
Pmi-Mir-219
Rno-Mir-219-P2
Rno-Mir-219-P2-as
Sha-Mir-219-P2
Sko-Mir-219
Spt-Mir-219-P2
Spu-Mir-219
Sto-Mir-219-P2
Tca-Mir-219
Tgu-Mir-219-P2
Xbo-Mir-219
Xtr-Mir-219-P2
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001663975.1_XLA_v2) |
NW_016694827.1: 651974-652040 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAAAGAUCAACGACACUGAGCUCUCGCCCUUGAUUGUCCAAACGCAAUUCUUGUUCCAAUAGAAAUUUCAAGCCAAGAAUUGUGCCUGGACAUCUGUGGCUGGUGAUCCCCGGUCUUCAGAAUCAGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAAAGAUCAACGACACU--| GCU C CUU U AA UUCCAAUAG
GA CU GCC GAU GUCCA CGCAAUUCUUG A
CU GG CGG CUA CAGGU GUGUUAAGAAC A
CGACUAAGACUUCUGGCCC^ AGU U UGU - CC CGAACUUUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Xla-Mir-219-P2d_5p |
mirBase accession | None |
Sequence |
0- UGAUUGUCCAAACGCAAUUCUUG -23
Get sequence
|
Co-mature sequence |
Xla-Mir-219-P2d_3p |
mirBase accession | None |
Sequence |
45- AGAAUUGUGCCUGGACAUCUGU -67
Get sequence
|