MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-219-P2c

Family name MIR-219 (all species)
Seed GAUUGUC
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-219-P2d 
Orthologues Aae-Mir-219  Aca-Mir-219-P2  Ami-Mir-219-P2  Bfl-Mir-219  Bge-Mir-219  Bla-Mir-219  Bta-Mir-219-P2  Bta-Mir-219-P2-as  Cfa-Mir-219-P2  Cfa-Mir-219-P2-as  Cgi-Mir-219  Cin-Mir-219  Cli-Mir-219-P2  Cmi-Mir-219-P2  Cpi-Mir-219-P2  Cpo-Mir-219-P2  Cpo-Mir-219-P2-as  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P2  Dno-Mir-219-P2-as  Dpu-Mir-219  Dsi-Mir-219  Dya-Mir-219  Esc-Mir-219  Ete-Mir-219-P2  Gga-Mir-219-P2  Gja-Mir-219-P2  Hsa-Mir-219-P2  Hsa-Mir-219-P2-as  Isc-Mir-219  Lan-Mir-219  Lch-Mir-219-P2  Loc-Mir-219-P2  Mdo-Mir-219-P2  Mml-Mir-219-P2  Mml-Mir-219-P2-as  Mmu-Mir-219-P2  Mmu-Mir-219-P2-as  Mun-Mir-219-P2  Oan-Mir-219-P2  Obi-Mir-219  Ocu-Mir-219-P2  Ocu-Mir-219-P2-as  Ovu-Mir-219  Pbv-Mir-219-P2  Pfl-Mir-219  Pma-Mir-219-o2  Pmi-Mir-219  Rno-Mir-219-P2  Rno-Mir-219-P2-as  Sha-Mir-219-P2  Sko-Mir-219  Spt-Mir-219-P2  Spu-Mir-219  Sto-Mir-219-P2  Tca-Mir-219  Tgu-Mir-219-P2  Xbo-Mir-219  Xtr-Mir-219-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030739.1: 32552450-32552516 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAAGAUCAACAACACGGAGCUCUCGCCCUUGAUUGUCCAAACGCAAUUCUUGUUCCAAUAGAAAUUUCAAGCCAAGAAUUGUGCCUGGACAUCUGUGGCUGGUGAUCCCCGGUCUUCAGAAUCAGC
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Structure
        10          20        30        40        50        60   
CAAAGAUCAACAACACG--| GCU  C   CUU   U     AA           UUCCAAUAG 
                   GA   CU GCC   GAU GUCCA  CGCAAUUCUUG         A
                   CU   GG CGG   CUA CAGGU  GUGUUAAGAAC         A
CGACUAAGACUUCUGGCCC^ AGU  U   UGU   -     CC           CGAACUUUA 
     120       110       100         90        80        70
Deep sequencing
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CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg He Re St St St St
Mature sequence

Xla-Mir-219-P2c_5p
mirBase accessionNone
Sequence 
0- UGAUUGUCCAAACGCAAUUCUUG -23
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Co-mature sequence

Xla-Mir-219-P2c_3p
mirBase accessionNone
Sequence 
45- AGAAUUGUGCCUGGACAUCUGU -67
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