MirGeneDB

MirGeneDB ID

Xtr-Mir-219-P2

Family name MIR-219 (all species)
Seed GAAUUGU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-219
Paralogues
Orthologues Aae-Mir-219  Aca-Mir-219-P2  Ami-Mir-219-P2  Bfl-Mir-219  Bge-Mir-219  Bta-Mir-219-P2  Bta-Mir-219-P2-as  Cfa-Mir-219-P2  Cfa-Mir-219-P2-as  Cgi-Mir-219  Cin-Mir-219  Cli-Mir-219-P2  Cpi-Mir-219-P2  Cpo-Mir-219-P2  Cpo-Mir-219-P2-as  Cte-Mir-219  Dan-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P2  Dno-Mir-219-P2-as  Dpu-Mir-219  Dre-Mir-219-P2a  Dre-Mir-219-P2b  Ete-Mir-219-P2  Gga-Mir-219-P2  Hsa-Mir-219-P2  Hsa-Mir-219-P2-as  Isc-Mir-219  Lan-Mir-219  Mdo-Mir-219-P2  Mml-Mir-219-P2  Mml-Mir-219-P2-as  Mmu-Mir-219-P2  Mmu-Mir-219-P2-as  Oan-Mir-219-P2  Ocu-Mir-219-P2  Ocu-Mir-219-P2-as  Pfl-Mir-219  Pmi-Mir-219  Rno-Mir-219-P2  Rno-Mir-219-P2-as  Sha-Mir-219-P2  Sko-Mir-219  Spu-Mir-219  Sto-Mir-219-P2  Tca-Mir-219  Tgu-Mir-219-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(xenTro7)
KB022034: 3070-3136 [-] UCSC
Precursor
(pre-Mir +30nt flank)
ACAAAGAUCAACCCAUGGAGCUCUCGCCCUUGAUUGUCCAAACGCAAUUCUUGUUCCAAUAGAAAUAUCAAGCCAAGAAUUGUGCCUGGACAUCUGUGGCUGGUGAUCCCCGGUCUUCAGAAUCAGC
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Structure
        10          20        30        40        50        60   
ACAAAGAUCAACCCAUG--| GCU  C   CUU   U     AA           UUCCAAUAG 
                   GA   CU GCC   GAU GUCCA  CGCAAUUCUUG         A
                   CU   GG CGG   CUA CAGGU  GUGUUAAGAAC         A
CGACUAAGACUUCUGGCCC^ AGU  U   UGU   -     CC           CGAACUAUA 
     120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-219-P2_5p*

MirBase accessionMIMAT0003632
Sequence
0- UGAUUGUCCAAACGCAAUUCUUG -23
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Validated targets TargetScanVert: xtr-miR-219
Mature sequence

Xtr-Mir-219-P2_3p

MirBase accessionNone
Sequence
45- AGAAUUGUGCCUGGACAUCUGU -67
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