MirGeneDB ID | Tni-Mir-219-P2b |
Family name |
MIR-219 (all species) |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
tni-mir-219-1
|
Paralogues |
Tni-Mir-219-P2a
Tni-Mir-219-P3a
Tni-Mir-219-P3b
|
Orthologues |
Aae-Mir-219
Aca-Mir-219-P2
Aga-Mir-219
Agr-Mir-219
Ami-Mir-219-P2
Bfl-Mir-219
Bge-Mir-219
Bko-Mir-219
Bla-Mir-219
Bpl-Mir-219
Bta-Mir-219-P2
Bta-Mir-219-P2-as
Cfa-Mir-219-P2
Cfa-Mir-219-P2-as
Cin-Mir-219
Cja-Mir-219-P2
Cli-Mir-219-P2
Cmi-Mir-219-P2
Cpi-Mir-219-P2
Cpo-Mir-219-P2
Cpo-Mir-219-P2-as
Csc-Mir-219
Cte-Mir-219
Dan-Mir-219
Dgr-Mir-219
Dlo-Mir-219
Dma-Mir-219
Dme-Mir-219
Dmo-Mir-219
Dno-Mir-219-P2
Dno-Mir-219-P2-as
Dpu-Mir-219
Dre-Mir-219-P2b
Dsi-Mir-219
Dya-Mir-219
Eba-Mir-219
Eca-Mir-219-P2
Egr-Mir-219
Esc-Mir-219
Ete-Mir-219-P2
Gga-Mir-219-P2
Gja-Mir-219-P2
Gpa-Mir-219
Gsa-Mir-219
Gsp-Mir-219
Hmi-Mir-219
Hru-Mir-219
Hsa-Mir-219-P2
Hsa-Mir-219-P2-as
Isc-Mir-219
Laf-Mir-219-P2
Lan-Mir-219
Lch-Mir-219-P2
Llo-Mir-219
Loc-Mir-219-P2
Mal-Mir-219-P2b
Mdo-Mir-219-P2
Mgi-Mir-219
Mml-Mir-219-P2
Mml-Mir-219-P2-as
Mmr-Mir-219-P2
Mmu-Mir-219-P2
Mmu-Mir-219-P2-as
Mom-Mir-219
Mun-Mir-219-P2
Neu-Mir-219-P2
Oan-Mir-219-P2
Obi-Mir-219
Ocu-Mir-219-P2
Ocu-Mir-219-P2-as
Ofu-Mir-219
Ovu-Mir-219
Pab-Mir-219-P2
Pab-Mir-219-P2-as
Pau-Mir-219
Pbv-Mir-219-P2
Pca-Mir-219
Pcr-Mir-219
Pfl-Mir-219
Pma-Mir-219-o2
Pmi-Mir-219
Pve-Mir-219
Rno-Mir-219-P2
Rno-Mir-219-P2-as
Rph-Mir-219
Sha-Mir-219-P2
Sko-Mir-219
Sma-Mir-219
Sne-Mir-219
Snu-Mir-219
Spt-Mir-219-P2
Spu-Mir-219
Sro-Mir-219
Sto-Mir-219-P2
Tca-Mir-219
Tgu-Mir-219-P2
Tur-Mir-219
War-Mir-219
Xbo-Mir-219
Xtr-Mir-219-P2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
12: 10155057-10155122 [-]
UCSC
Ensembl
|
Seed |
GAUUGUC |
Precursor (pre-Mir +30nt flank) |
UUUUGGAUGUGUUUUCUGAGCACUAGCAGCUGAUUGUCCAAACGCAAUUCUUGUGAAAAUCCAAAGCCUACCCGAGAAUUGUGCCUGGACAUCUGUUGCUGGACGCUCCUGCUCUUCUUUUUGCAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUUGGAUGUGUUUUCU- A-| U U AA UGAAAAUCC
GAGC CUAGCAGC GAU GUCCA CGCAAUUCUUG \
CUCG GGUCGUUG CUA CAGGU GUGUUAAGAGC A
UACGUUUUUCUUCUCGUC CA^ U - CC CCAUCCGAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature. |
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Tni-Mir-219-P2b_5p |
mirBase accession | MIMAT0002901 |
Sequence |
0- UGAUUGUCCAAACGCAAUUCUUG -23
Get sequence
|
Co-mature sequence |
Tni-Mir-219-P2b_3p |
mirBase accession | None |
Sequence |
44- AGAAUUGUGCCUGGACAUCUGU -66
Get sequence
|