MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-219-P3b

Family name MIR-219 (all species)
Seed GAUUGUC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-219-P2a  Tni-Mir-219-P2b  Tni-Mir-219-P3a 
Orthologues Aae-Mir-219  Aca-Mir-219-P3  Ami-Mir-219-P3  Bfl-Mir-219  Bge-Mir-219  Bla-Mir-219  Bta-Mir-219-P3  Cfa-Mir-219-P3  Cgi-Mir-219  Cin-Mir-219  Cmi-Mir-219-P3  Cpi-Mir-219-P3  Cpo-Mir-219-P3  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P3  Dpu-Mir-219  Dsi-Mir-219  Dya-Mir-219  Esc-Mir-219  Ete-Mir-219-P3  Gja-Mir-219-P3  Gmo-Mir-219-P3b  Hsa-Mir-219-P3  Isc-Mir-219  Lan-Mir-219  Lch-Mir-219-P3  Mal-Mir-219-P3b  Mdo-Mir-219-P3  Mml-Mir-219-P3  Mmu-Mir-219-P3  Mmu-Mir-219-P3-as  Mun-Mir-219-P3-v1  Mun-Mir-219-P3-v2  Obi-Mir-219  Ocu-Mir-219-P3  Ovu-Mir-219  Pbv-Mir-219-P3  Pfl-Mir-219  Pmi-Mir-219  Rno-Mir-219-P3  Sha-Mir-219-P3  Sko-Mir-219  Spt-Mir-219-P3  Spu-Mir-219  Sto-Mir-219-P3-v1  Sto-Mir-219-P3-v2  Tca-Mir-219  Xbo-Mir-219 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
8: 6475886-6475950 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGUUCCAGGUUUGACAGGAUGUCUGGUGUUGAUUGUCCAAACGCAAUUCUUGUGUGAUUUCUCCAUAUUCAGGAGUUGUGGAUGGACAUCAUGCCCCCGACUCUUAUUGACUUCCCCUUGCUGA
Get precursor sequence
Structure
        10           20        30         40        50        60  
CCGUUCCAGGUUUGACA---|  U   U  U  -    U     AA           UGUGAUUU 
                    GGA GUC GG GU UGAU GUCCA  CGCAAUUCUUG        \
                    UCU CAG CC CG ACUA CAGGU  GUGUUGAGGAC        C
AGUCGUUCCCCUUCAGUUAU^  -   C  C  U    -     AG           UUAUACCU 
   120       110        100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-219-P3b_5p

mirBase accessionNone
Sequence
0- UGAUUGUCCAAACGCAAUUCUUG -23
Get sequence
Star sequence

Tni-Mir-219-P3b_3p* (predicted)

mirBase accessionNone
Sequence
42- GGAGUUGUGGAUGGACAUCAUGC -65
Get sequence