MirGeneDB 3.0
MirGeneDB ID

Mun-Mir-219-P3

Family name MIR-219 (all species)
Species Microcaecilia (Microcaecilia unicolor)
MiRBase ID
Paralogues Mun-Mir-219-P2 
Orthologues Aae-Mir-219  Aca-Mir-219-P3  Aga-Mir-219  Agr-Mir-219  Ami-Mir-219-P3  Bfl-Mir-219  Bge-Mir-219  Bko-Mir-219  Bla-Mir-219  Bpl-Mir-219  Bta-Mir-219-P3  Cfa-Mir-219-P3  Cin-Mir-219  Cja-Mir-219-P3  Cmi-Mir-219-P3  Cpi-Mir-219-P3  Cpo-Mir-219-P3  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dgr-Mir-219  Dlo-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P3  Dpu-Mir-219  Dre-Mir-219-P3a  Dsi-Mir-219  Dya-Mir-219  Eba-Mir-219  Eca-Mir-219-P3  Egr-Mir-219  Esc-Mir-219  Ete-Mir-219-P3  Gja-Mir-219-P3  Gmo-Mir-219-P3a  Gmo-Mir-219-P3b  Gpa-Mir-219  Gsa-Mir-219  Gsp-Mir-219  Hmi-Mir-219  Hru-Mir-219  Hsa-Mir-219-P3  Isc-Mir-219  Laf-Mir-219-P3  Lan-Mir-219  Lch-Mir-219-P3  Llo-Mir-219  Mal-Mir-219-P3a  Mal-Mir-219-P3b  Mdo-Mir-219-P3  Mgi-Mir-219  Mml-Mir-219-P3  Mmr-Mir-219-P3  Mmu-Mir-219-P3  Mmu-Mir-219-P3-as  Mom-Mir-219  Neu-Mir-219-P3  Obi-Mir-219  Ocu-Mir-219-P3  Ofu-Mir-219  Ovu-Mir-219  Pab-Mir-219-P3  Pau-Mir-219  Pbv-Mir-219-P3  Pca-Mir-219  Pcr-Mir-219  Pfl-Mir-219  Pmi-Mir-219  Pve-Mir-219  Rno-Mir-219-P3  Rph-Mir-219  Sha-Mir-219-P3  Sko-Mir-219  Sma-Mir-219  Sne-Mir-219  Snu-Mir-219  Spt-Mir-219-P3  Spu-Mir-219  Sro-Mir-219  Sto-Mir-219-P3-v1  Tca-Mir-219  Tni-Mir-219-P3a  Tni-Mir-219-P3b  Tur-Mir-219  War-Mir-219  Xbo-Mir-219 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_901765095.2_aMicUni1.2)		 LR594634.1: 205487563-205487629 [-]
Clustered miRNAs
(< 50kb from Mir-219-P3-v1)		 Mir-219-P3-v1 LR594634.1: 205487563-205487629 [-]
Mir-219-P3-v2 LR594634.1: 205487565-205487627 [-]
Variant

Mun-Mir-219-P3-v1
Seed GAUUGUC
Precursor
(pre-Mir +30nt flank)		 
ACAACCCAGCACCUGACGAGCCUCAGCUCCUGAUUGUCCAAACGCAAUUCUUGUGUCUUUUCUGGUCCGAGCCCAAGAAUUGGGUCUGGGCAUCCUGAGCUGUUGUCUCAAAUCAUCUCUUCGUGAA
Get precursor sequence
Structure
        10         20         30        40        50        60   
ACAACCCAGCACCUGAC-   -|CU      CU   U     A  G         UGUCUUUUC 
                  GAG C  CAGCUC  GAU GUCCA AC CAAUUCUUG         U
                  CUC G  GUCGAG  CUA CGGGU UG GUUAAGAAC         G
AAGUGCUUCUCUACUAAA   U^UU      UC   -     C  G         CCGAGCCUG 
     120       110       100         90        80        70
Deep sequencing
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CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Mature sequence

Mun-Mir-219-P3-v1_5p
mirBase accessionNone
Sequence 
0- UGAUUGUCCAAACGCAAUUCUUG -23
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Co-mature sequence

Mun-Mir-219-P3-v1_3p
mirBase accessionNone
Sequence 
45- AGAAUUGGGUCUGGGCAUCCUG -67
Get sequence
Variant

Mun-Mir-219-P3-v2
Seed UUGUCCA
Precursor
(pre-Mir +30nt flank)		 
AACCCAGCACCUGACGAGCCUCAGCUCCUGAUUGUCCAAACGCAAUUCUUGUGUCUUUUCUGGUCCGAGCCCAAGAAUUGGGUCUGGGCAUCCUGAGCUGUUGUCUCAAAUCAUCUCUUCGUG
Get precursor sequence
Structure
        10          20        30        40        50        60 
AACCCAGCACCUGACGA--| CU      CU   U     A  G         U UCUUUUC 
                   GC  CAGCUC  GAU GUCCA AC CAAUUCUUG G       U
                   UG  GUCGAG  CUA CGGGU UG GUUAAGAAC C       G
GUGCUUCUCUACUAAACUC^ UU      UC   -     C  G         C GAGCCUG 
 120       110       100        90         80        70
Deep sequencing
Go to detailed chart
CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Mun-Mir-219-P3-v2_5p
mirBase accessionNone
Sequence 
0- AUUGUCCAAACGCAAUUCUUGUG -23
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Co-mature sequence

Mun-Mir-219-P3-v2_3p
mirBase accessionNone
Sequence 
41- CAAGAAUUGGGUCUGGGCAUCC -63
Get sequence