Mir-219-P3-v1

MirGeneDB ID

Mun-Mir-219-P3-v1

Family name

MIR-219 (all species)

Seed

GAUUGUC

Species

Microcaecilia (Microcaecilia unicolor)

MiRBase ID

Paralogues

Mun-Mir-219-P2 Mun-Mir-219-P3-v2

Orthologues

Aae-Mir-219 Aca-Mir-219-P3 Ami-Mir-219-P3 Bfl-Mir-219 Bge-Mir-219 Bla-Mir-219 Bta-Mir-219-P3 Cfa-Mir-219-P3 Cgi-Mir-219 Cin-Mir-219 Cmi-Mir-219-P3 Cpi-Mir-219-P3 Cpo-Mir-219-P3 Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dno-Mir-219-P3 Dpu-Mir-219 Dre-Mir-219-P3a Dsi-Mir-219 Dya-Mir-219 Esc-Mir-219 Ete-Mir-219-P3 Gja-Mir-219-P3 Gmo-Mir-219-P3a Gmo-Mir-219-P3b Hsa-Mir-219-P3 Isc-Mir-219 Lan-Mir-219 Lch-Mir-219-P3 Mal-Mir-219-P3a Mal-Mir-219-P3b Mdo-Mir-219-P3 Mml-Mir-219-P3 Mmu-Mir-219-P3 Mmu-Mir-219-P3-as Obi-Mir-219 Ocu-Mir-219-P3 Ovu-Mir-219 Pbv-Mir-219-P3 Pfl-Mir-219 Pmi-Mir-219 Rno-Mir-219-P3 Sha-Mir-219-P3 Sko-Mir-219 Spt-Mir-219-P3 Spu-Mir-219 Sto-Mir-219-P3-v1 Sto-Mir-219-P3-v2 Tca-Mir-219 Tni-Mir-219-P3a Tni-Mir-219-P3b Xbo-Mir-219

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Mun_miRNA_loci)

219-P2-v1_LR594634.1:205487529-205487662: 35-101 [-]

Precursor
(pre-Mir +30nt flank)

ACAACCCAGCACCUGACGAGCCUCAGCUCCUGAUUGUCCAAACGCAAUUCUUGUGUCUUUUCUGGUCCGAGCCCAAGAAUUGGGUCUGGGCAUCCUGAGCUGUUGUCUCAAAUCAUCUCUUCGUGAA

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Structure

        10         20         30        40        50        60   
ACAACCCAGCACCUGAC-   -|CU      CU   U     A  G         UGUCUUUUC 
                  GAG C  CAGCUC  GAU GUCCA AC CAAUUCUUG         U
                  CUC G  GUCGAG  CUA CGGGU UG GUUAAGAAC         G
AAGUGCUUCUCUACUAAA   U^UU      UC   -     C  G         CCGAGCCUG 
     120       110       100         90        80        70

Deep sequencing

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Comment

The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Mun-Mir-219-P3-v1_5p

mirBase accession

None

Sequence

0- UGAUUGUCCAAACGCAAUUCUUG -23

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Co-mature sequence

Mun-Mir-219-P3-v1_3p

mirBase accession

None

Sequence

45- AGAAUUGGGUCUGGGCAUCCUG -67

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