Mir-219-P3

MirGeneDB ID

Ocu-Mir-219-P3

Family name

MIR-219 (all species)

Seed

GAUUGUC

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-219a

Paralogues

Ocu-Mir-219-P2 Ocu-Mir-219-P2-as

Orthologues

Aae-Mir-219 Aca-Mir-219-P3 Ami-Mir-219-P3 Bfl-Mir-219 Bge-Mir-219 Bla-Mir-219 Bta-Mir-219-P3 Cfa-Mir-219-P3 Cgi-Mir-219 Cin-Mir-219 Cmi-Mir-219-P3 Cpi-Mir-219-P3 Cpo-Mir-219-P3 Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dno-Mir-219-P3 Dpu-Mir-219 Dre-Mir-219-P3a Dsi-Mir-219 Dya-Mir-219 Esc-Mir-219 Ete-Mir-219-P3 Gja-Mir-219-P3 Gmo-Mir-219-P3a Gmo-Mir-219-P3b Hsa-Mir-219-P3 Isc-Mir-219 Lan-Mir-219 Lch-Mir-219-P3 Mal-Mir-219-P3a Mal-Mir-219-P3b Mdo-Mir-219-P3 Mml-Mir-219-P3 Mmu-Mir-219-P3 Mmu-Mir-219-P3-as Mun-Mir-219-P3-v1 Mun-Mir-219-P3-v2 Obi-Mir-219 Ovu-Mir-219 Pbv-Mir-219-P3 Pfl-Mir-219 Pmi-Mir-219 Rno-Mir-219-P3 Sha-Mir-219-P3 Sko-Mir-219 Spt-Mir-219-P3 Spu-Mir-219 Sto-Mir-219-P3-v1 Sto-Mir-219-P3-v2 Tca-Mir-219 Tni-Mir-219-P3a Tni-Mir-219-P3b Xbo-Mir-219

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(oryCun2_add)

chr12: 23632838-23632901 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCGCUCCCUCCCGCCGCGGGCCGCGGCUCCUGAUUGUCCAAACGCAAUUCUCGAGUCUAUGGCUCCGGCCGAGAGUUGGGUUUGGACGUCCCGAGCCGCUGCCCCCAGACCUCGAGGGGGAGAG

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Structure

        10           20        30        40        50        60 
GCGCUCCCUCCCGCCGC---|   C       CU   U        G         AGUCUAU 
                    GGGC GCGGCUC  GAU GUCCAAAC CAAUUCUCG       G
                    CCCG CGCCGAG  CUG CAGGUUUG GUUGAGAGC       G
GAGAGGGGGAGCUCCAGACC^   U       CC   -        G         CGGCCUC 
  120       110       100        90         80        70

Deep sequencing

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Comment

The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

He	Ki	Te	To	Wh

Mature sequence

Ocu-Mir-219-P3_5p

mirBase accession

MIMAT0048350

Sequence

0- UGAUUGUCCAAACGCAAUUCUCG -23

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Co-mature sequence

Ocu-Mir-219-P3_3p

mirBase accession

MIMAT0048351

Sequence

41- AGAGUUGGGUUUGGACGUCCCGA -64

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