Mir-219-P3

MirGeneDB ID

Eca-Mir-219-P3

Family name

MIR-219 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-219-1

Paralogues

Eca-Mir-219-P2

Orthologues

Aae-Mir-219 Aca-Mir-219-P3 Aga-Mir-219 Agr-Mir-219 Ami-Mir-219-P3 Bfl-Mir-219 Bge-Mir-219 Bko-Mir-219 Bla-Mir-219 Bpl-Mir-219 Bta-Mir-219-P3 Cfa-Mir-219-P3 Cin-Mir-219 Cja-Mir-219-P3 Cmi-Mir-219-P3 Cpi-Mir-219-P3 Cpo-Mir-219-P3 Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dgr-Mir-219 Dlo-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dno-Mir-219-P3 Dpu-Mir-219 Dre-Mir-219-P3a Dsi-Mir-219 Dya-Mir-219 Eba-Mir-219 Egr-Mir-219 Esc-Mir-219 Ete-Mir-219-P3 Gja-Mir-219-P3 Gmo-Mir-219-P3a Gmo-Mir-219-P3b Gpa-Mir-219 Gsa-Mir-219 Gsp-Mir-219 Hmi-Mir-219 Hru-Mir-219 Hsa-Mir-219-P3 Isc-Mir-219 Laf-Mir-219-P3 Lan-Mir-219 Lch-Mir-219-P3 Llo-Mir-219 Mal-Mir-219-P3a Mal-Mir-219-P3b Mdo-Mir-219-P3 Mgi-Mir-219 Mml-Mir-219-P3 Mmr-Mir-219-P3 Mmu-Mir-219-P3 Mmu-Mir-219-P3-as Mom-Mir-219 Mun-Mir-219-P3-v1 Neu-Mir-219-P3 Obi-Mir-219 Ocu-Mir-219-P3 Ofu-Mir-219 Ovu-Mir-219 Pab-Mir-219-P3 Pau-Mir-219 Pbv-Mir-219-P3 Pca-Mir-219 Pcr-Mir-219 Pfl-Mir-219 Pmi-Mir-219 Pve-Mir-219 Rno-Mir-219-P3 Rph-Mir-219 Sha-Mir-219-P3 Sko-Mir-219 Sma-Mir-219 Sne-Mir-219 Snu-Mir-219 Spt-Mir-219-P3 Spu-Mir-219 Sro-Mir-219 Sto-Mir-219-P3-v1 Tca-Mir-219 Tni-Mir-219-P3a Tni-Mir-219-P3b Tur-Mir-219 War-Mir-219 Xbo-Mir-219

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009167.1: 34558902-34558964 [+] UCSC Ensembl

Seed

GAUUGUC

Precursor
(pre-Mir +30nt flank)

CCUCCCUCCCCCGCCCCGGGCCGCGGCUCUUGAUUGUCCAAACGCAAUUCUCGAGUCUCUGGCUCCGGCCGAGAGUUGAGUCUGGACGUCCCGAGCCGCCGCCCCCAAACCUCGAGGGGAGUG

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Structure

        10          20        30        40        50        60 
CCUCCCUCCCCCGCCCC--|   C       UU   U     A  G         AGUCUCU 
                   GGGC GCGGCUC  GAU GUCCA AC CAAUUCUCG       G
                   CCCG CGCCGAG  CUG CAGGU UG GUUGAGAGC       G
GUGAGGGGAGCUCCAAACC^   C       CC   -     C  A         CGGCCUC 
 120       110       100        90         80        70

Deep sequencing

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Comment

The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-219-P3_5p

mirBase accession

MIMAT0013099

Sequence

0- UGAUUGUCCAAACGCAAUUCUCG -23

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Co-mature sequence

Eca-Mir-219-P3_3p

mirBase accession

None

Sequence

41- AGAGUUGAGUCUGGACGUCCCG -63

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