MirGeneDB ID | Mmu-Mir-219-P3 |
Family name |
MIR-219 (all species) |
Species |
House mouse (Mus musculus) |
MiRBase ID |
mmu-mir-219a-1
|
Paralogues |
Mmu-Mir-219-P2
Mmu-Mir-219-P2-as
Mmu-Mir-219-P3-as
|
Orthologues |
Aae-Mir-219
Aca-Mir-219-P3
Aga-Mir-219
Agr-Mir-219
Ami-Mir-219-P3
Bfl-Mir-219
Bge-Mir-219
Bko-Mir-219
Bla-Mir-219
Bpl-Mir-219
Bta-Mir-219-P3
Cfa-Mir-219-P3
Cin-Mir-219
Cja-Mir-219-P3
Cmi-Mir-219-P3
Cpi-Mir-219-P3
Cpo-Mir-219-P3
Csc-Mir-219
Cte-Mir-219
Dan-Mir-219
Dgr-Mir-219
Dlo-Mir-219
Dma-Mir-219
Dme-Mir-219
Dmo-Mir-219
Dno-Mir-219-P3
Dpu-Mir-219
Dre-Mir-219-P3a
Dsi-Mir-219
Dya-Mir-219
Eba-Mir-219
Eca-Mir-219-P3
Egr-Mir-219
Esc-Mir-219
Ete-Mir-219-P3
Gja-Mir-219-P3
Gmo-Mir-219-P3a
Gmo-Mir-219-P3b
Gpa-Mir-219
Gsa-Mir-219
Gsp-Mir-219
Hmi-Mir-219
Hru-Mir-219
Hsa-Mir-219-P3
Isc-Mir-219
Laf-Mir-219-P3
Lan-Mir-219
Lch-Mir-219-P3
Llo-Mir-219
Mal-Mir-219-P3a
Mal-Mir-219-P3b
Mdo-Mir-219-P3
Mgi-Mir-219
Mml-Mir-219-P3
Mmr-Mir-219-P3
Mom-Mir-219
Mun-Mir-219-P3-v1
Neu-Mir-219-P3
Obi-Mir-219
Ocu-Mir-219-P3
Ofu-Mir-219
Ovu-Mir-219
Pab-Mir-219-P3
Pau-Mir-219
Pbv-Mir-219-P3
Pca-Mir-219
Pcr-Mir-219
Pfl-Mir-219
Pmi-Mir-219
Pve-Mir-219
Rno-Mir-219-P3
Rph-Mir-219
Sha-Mir-219-P3
Sko-Mir-219
Sma-Mir-219
Sne-Mir-219
Snu-Mir-219
Spt-Mir-219-P3
Spu-Mir-219
Sro-Mir-219
Sto-Mir-219-P3-v1
Tca-Mir-219
Tni-Mir-219-P3a
Tni-Mir-219-P3b
Tur-Mir-219
War-Mir-219
Xbo-Mir-219
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (mm10) |
chr17: 34025010-34025072 [-]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-219-P3) |
Mir-219-P3
chr17: 34025010-34025072 [-]
UCSC
Ensembl
Mir-219-P3-as
chr17: 34025012-34025073 [+]
UCSC
Ensembl
|
Seed |
GAUUGUC |
Precursor (pre-Mir +30nt flank) |
GCUUCUCUCCCCGUCCCGGGCCGCGGCUCCUGAUUGUCCAAACGCAAUUCUCGAGUCUCUGGCUCCGGCCGAGAGUUGCGUCUGGACGUCCCGAGCCGCCGCCCCCAAACCUCGAGGGGGAGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCUUCUCUCCCCGUCCC--| C CU U A AGUCUCU
GGGC GCGGCUC GAU GUCCA ACGCAAUUCUCG G
CCCG CGCCGAG CUG CAGGU UGCGUUGAGAGC G
AGAGGGGGAGCUCCAAACC^ C CC - C CGGCCUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Br |
Br |
Ce |
Ce |
Em |
Em |
He |
Ki |
Li |
Lu |
Ov |
Pa |
Sk |
Sp |
Te |
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Mature sequence |
Mmu-Mir-219-P3_5p |
mirBase accession | MIMAT0000664 |
Sequence |
0- UGAUUGUCCAAACGCAAUUCUCG -23
Get sequence
|
Proposed targets |
microrna.org: MIMAT0000664
TargetScanVert: mmu-miR-219a-5p
miRDB: MIMAT0000664
|
Co-mature sequence |
Mmu-Mir-219-P3_3p |
mirBase accession | MIMAT0017055 |
Sequence |
41- AGAGUUGCGUCUGGACGUCCCG -63
Get sequence
|
Proposed targets |
TargetScanVert: mmu-miR-219a-1-3p
miRDB: MIMAT0017055
|