Mir-219-P3b

MirGeneDB ID

Mal-Mir-219-P3b

Family name

MIR-219 (all species)

Seed

GAUUGUC

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-219-P2a Mal-Mir-219-P2b Mal-Mir-219-P3a

Orthologues

Aae-Mir-219 Aca-Mir-219-P3 Ami-Mir-219-P3 Bfl-Mir-219 Bge-Mir-219 Bla-Mir-219 Bta-Mir-219-P3 Cfa-Mir-219-P3 Cgi-Mir-219 Cin-Mir-219 Cmi-Mir-219-P3 Cpi-Mir-219-P3 Cpo-Mir-219-P3 Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dno-Mir-219-P3 Dpu-Mir-219 Dsi-Mir-219 Dya-Mir-219 Esc-Mir-219 Ete-Mir-219-P3 Gja-Mir-219-P3 Gmo-Mir-219-P3b Hsa-Mir-219-P3 Isc-Mir-219 Lan-Mir-219 Lch-Mir-219-P3 Mdo-Mir-219-P3 Mml-Mir-219-P3 Mmu-Mir-219-P3 Mmu-Mir-219-P3-as Mun-Mir-219-P3-v1 Mun-Mir-219-P3-v2 Obi-Mir-219 Ocu-Mir-219-P3 Ovu-Mir-219 Pbv-Mir-219-P3 Pfl-Mir-219 Pmi-Mir-219 Rno-Mir-219-P3 Sha-Mir-219-P3 Sko-Mir-219 Spt-Mir-219-P3 Spu-Mir-219 Sto-Mir-219-P3-v1 Sto-Mir-219-P3-v2 Tca-Mir-219 Tni-Mir-219-P3b Xbo-Mir-219

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884920.1: 559082-559145 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCUUUCCAAGUUUAACAGGGAGCCUGGCGCUGAUUGUCCAAACGCAAUUCUUGUAUUACUUCUCCACUUCCAGGAGUUGUGGAUGGACAUCAGACCCCCGACUCCUGCUUACUUCCUCCCGCAU

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Structure

        10         20          30        40        50        60  
UCUUUCCAAGUUUAACA-     CC   CG--|    U     AA           UAUUACUU 
                  GGGAG  UGG    CUGAU GUCCA  CGCAAUUCUUG        \
                  UCCUC  GCC    GACUA CAGGU  GUGUUGAGGAC        C
UACGCCCUCCUUCAUUCG     A-   CCCA^    -     AG           CUUCACCU 
  120       110        100        90         80        70

Deep sequencing

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Comment

The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-219-P3b_5p

mirBase accession

None

Sequence

0- UGAUUGUCCAAACGCAAUUCUUG -23

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Co-mature sequence

Mal-Mir-219-P3b_3p

mirBase accession

None

Sequence

42- GGAGUUGUGGAUGGACAUCAGA -64

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