MirGeneDB

MirGeneDB ID

Sha-Mir-219-P2

Family name MIR-219 (all species)
Seed GAAUUGU
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-219-P1 
Orthologues Aae-Mir-219  Aca-Mir-219-P2  Ami-Mir-219-P2  Bfl-Mir-219  Bge-Mir-219  Bta-Mir-219-P2  Bta-Mir-219-P2-as  Cfa-Mir-219-P2  Cfa-Mir-219-P2-as  Cgi-Mir-219  Cin-Mir-219  Cli-Mir-219-P2  Cpi-Mir-219-P2  Cpo-Mir-219-P2  Cpo-Mir-219-P2-as  Cte-Mir-219  Dan-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P2  Dno-Mir-219-P2-as  Dpu-Mir-219  Dre-Mir-219-P2a  Dre-Mir-219-P2b  Ete-Mir-219-P2  Gga-Mir-219-P2  Hsa-Mir-219-P2  Hsa-Mir-219-P2-as  Isc-Mir-219  Lan-Mir-219  Mdo-Mir-219-P2  Mml-Mir-219-P2  Mml-Mir-219-P2-as  Mmu-Mir-219-P2  Mmu-Mir-219-P2-as  Oan-Mir-219-P2  Ocu-Mir-219-P2  Ocu-Mir-219-P2-as  Pfl-Mir-219  Pmi-Mir-219  Rno-Mir-219-P2  Rno-Mir-219-P2-as  Sko-Mir-219  Spu-Mir-219  Sto-Mir-219-P2  Tca-Mir-219  Tgu-Mir-219-P2  Xtr-Mir-219-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(DEVIL7_traces)
AFEY01342777_Mir-219-P2: 894-958 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGGAGGACGGGGAGCAGGGGUUCCGCCGCUGAUUGUCCAAACGCAAUUCUUGUGCGAGUCUGCAGCCAACCGAGAAUUGUGGCUGGACAUCUGUGGCUGAGCUCCCGGCGCAACCGGGGAGAUC
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Structure
        10         20         30        40        50        60  
GGGGAGGACGGGGAGCA-   -|   C     U   U     AA           UGCGAGUC 
                  GGG GUUC GCCGC GAU GUCCA  CGCAAUUCUUG        U
                  CCC CGAG CGGUG CUA CAGGU  GUGUUAAGAGC        G
CUAGAGGGGCCAACGCGG   U^   U     U   -     CG           CAACCGAC 
   120       110       100        90         80        70
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-219-P2_5p*

MirBase accessionNone
Sequence
0- UGAUUGUCCAAACGCAAUUCUUG -23
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Mature sequence

Sha-Mir-219-P2_3p

MirBase accessionNone
Sequence
43- AGAAUUGUGGCUGGACAUCUGU -65
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