Mir-219-P7

MirGeneDB ID

Efe-Mir-219-P7

Family name

MIR-219 (all species)

Species

Common brandling worm (Eisenia fetida)

MiRBase ID

Paralogues

Efe-Mir-219-P8 Efe-Mir-219-P9

Orthologues

Aae-Mir-219 Aga-Mir-219 Agr-Mir-219 Bfl-Mir-219 Bge-Mir-219 Bko-Mir-219 Bla-Mir-219 Bpl-Mir-219 Cin-Mir-219 Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dgr-Mir-219 Dlo-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dpu-Mir-219 Dsi-Mir-219 Dya-Mir-219 Eba-Mir-219 Egr-Mir-219 Esc-Mir-219 Gpa-Mir-219 Gsa-Mir-219 Gsp-Mir-219 Hmi-Mir-219 Hru-Mir-219 Isc-Mir-219 Lan-Mir-219 Llo-Mir-219 Mgi-Mir-219 Mom-Mir-219 Obi-Mir-219 Ofu-Mir-219 Ovu-Mir-219 Pau-Mir-219 Pca-Mir-219 Pcr-Mir-219 Pfl-Mir-219 Pmi-Mir-219 Pve-Mir-219 Rph-Mir-219 Sko-Mir-219 Sma-Mir-219 Sne-Mir-219 Snu-Mir-219 Spu-Mir-219 Sro-Mir-219 Tca-Mir-219 Tur-Mir-219 War-Mir-219 Xbo-Mir-219

Node of Origin (locus)

E. fetida

Node of Origin (family)

Bilateria

Genome context
(Efe_combined)

Efet.01.135199: 2555-2617 [+]

Seed

GAUUGUC

Precursor
(pre-Mir +30nt flank)

AUUGGCCAGUCGUGAACACGGUUCUGGCGCUGAUUGUCCAAACGCAGUUCUUGUUCUCAUGUUUGUCGUCAAGAACUGUGUGUGGACGUCAGUGGCUUUACGUUCGCUCUACAUUCGCCAGAU

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Structure

        10           20         30        40        50        60 
AUUGGCCAGUCGUGAAC---|  GUUCU   -      U     A            UUCUCAU 
                    ACG     GGC GCUGAU GUCCA ACGCAGUUCUUG       G
                    UGC     UCG UGACUG CAGGU UGUGUCAAGAAC       U
UAGACCGCUUACAUCUCGCU^  AUU--   G      -     G            UGCUGUU 
 120       110       100          90         80        70

Deep sequencing

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Comment

The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Efe-Mir-219-P7_5p

mirBase accession

None

Sequence

0- UGAUUGUCCAAACGCAGUUCUUG -23

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Co-mature sequence

Efe-Mir-219-P7_3p

mirBase accession

None

Sequence

41- AGAACUGUGUGUGGACGUCAGU -63

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