Mir-219-P10a

MirGeneDB ID

Sme-Mir-219-P10a

Family name

MIR-219 (all species)

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-219

Paralogues

Sme-Mir-219-P10b

Orthologues

Aae-Mir-219 Aga-Mir-219 Agr-Mir-219 Bfl-Mir-219 Bge-Mir-219 Bko-Mir-219 Bla-Mir-219 Bpl-Mir-219 Cin-Mir-219 Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dgr-Mir-219 Dlo-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dpu-Mir-219 Dsi-Mir-219 Dya-Mir-219 Eba-Mir-219 Egr-Mir-219 Esc-Mir-219 Gpa-Mir-219 Gsa-Mir-219 Gsp-Mir-219 Hmi-Mir-219 Hru-Mir-219 Isc-Mir-219 Lan-Mir-219 Llo-Mir-219 Mgi-Mir-219 Mom-Mir-219 Obi-Mir-219 Ofu-Mir-219 Ovu-Mir-219 Pau-Mir-219 Pca-Mir-219 Pcr-Mir-219 Pfl-Mir-219 Pmi-Mir-219 Pve-Mir-219 Rph-Mir-219 Sko-Mir-219 Sma-Mir-219 Sne-Mir-219 Snu-Mir-219 Spu-Mir-219 Sro-Mir-219 Tca-Mir-219 Tur-Mir-219 War-Mir-219 Xbo-Mir-219

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Bilateria

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000123_dd_Smes_g4_123: 40416-40488 [+] UCSC Ensembl

Seed

GAUUGUC

Precursor
(pre-Mir +30nt flank)

GCGUAAGUUUGACGUACGGUAAUUUAUUGCUGAUUGUCCAUACGCAGUUCUCAAGGUCUAGAAUCGACGAAUUGCCGUUUAAGAAUUGCGAAUGGUCAUCAACAAUAAUUGCUGAAACCAUCAUUUGUAUCAC

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Structure

        10           20        30        40        50        60      
GCGUAAGUUUGACGUAC---|      U    C    U U    A         CAAGGUCUAGAAUC 
                    GGUAAUU AUUG UGAU G CCAU CGCAGUUCU              G
                    UCGUUAA UAAC ACUA C GGUA GCGUUAAGA              A
CACUAUGUUUACUACCAAAG^      -    A    - U    A         AUUUGCCGUUAAGC 
 130       120       110        100         90        80        70

Deep sequencing

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Comment

The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ag	Ag	Di	Gf	Ne	Ph	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Wh	Wh	Wh

Mature sequence

Sme-Mir-219-P10a_5p

mirBase accession

MIMAT0004006

Sequence

0- UGAUUGUCCAUACGCAGUUCUCA -23

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Co-mature sequence

Sme-Mir-219-P10a_3p

mirBase accession

MIMAT0012118

Sequence

51- AGAAUUGCGAAUGGUCAUCAAC -73

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