Mir-10-P2-v2

MirGeneDB ID

Bla-Mir-10-P2

Family name

MIR-10 (all species)

Species

European lancelet (Branchiostoma lanceolatum)

MiRBase ID

Paralogues

Bla-Mir-10-P1-v1 Bla-Mir-10-P2-v1 Bla-Mir-10-P3 Bla-Mir-10-P9 Bla-Mir-10-P10

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2b Aca-Mir-10-P2c Aca-Mir-10-P2d Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Ami-Mir-10-P2b Ami-Mir-10-P2c Ami-Mir-10-P2d Asp-Mir-10 Asu-Mir-10-P2o3 Asu-Mir-10-P2o4 Asu-Mir-10-P2o5 Asu-Mir-10-P2o6 Asu-Mir-10-P2o7 Asu-Mir-10-P2o8 Bfl-Mir-10-P2-v1 Bge-Mir-10-P2 Bko-Mir-10-P2 Bpl-Mir-10-P2 Bta-Mir-10-P2b Bta-Mir-10-P2c Bta-Mir-10-P2d Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2b Cfa-Mir-10-P2c Cfa-Mir-10-P2d Cin-Mir-10-P2 Cja-Mir-10-P2b Cja-Mir-10-P2c Cja-Mir-10-P2d Cli-Mir-10-P2c Cli-Mir-10-P2d Cmi-Mir-10-P2c Cmi-Mir-10-P2d Cpi-Mir-10-P2b Cpi-Mir-10-P2c Cpi-Mir-10-P2d Cpo-Mir-10-P2b Cpo-Mir-10-P2c Cpo-Mir-10-P2d Csc-Mir-10-P2r1 Csc-Mir-10-P2r2 Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2c Dno-Mir-10-P2d Dpu-Mir-10-P2 Dre-Mir-10-P2c1 Dre-Mir-10-P2c2 Dre-Mir-10-P2d1 Dre-Mir-10-P2d2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Ebu-Mir-10-P2e Ebu-Mir-10-P2f Eca-Mir-10-P2b Eca-Mir-10-P2c Eca-Mir-10-P2d Efe-Mir-10-P2g Efe-Mir-10-P2h Efe-Mir-10-P2i Efe-Mir-10-P2j Efe-Mir-10-P2k Ete-Mir-10-P2b Ete-Mir-10-P2c Ete-Mir-10-P2d Gga-Mir-10-P2c Gga-Mir-10-P2d Gja-Mir-10-P2b Gja-Mir-10-P2c Gja-Mir-10-P2d Gmo-Mir-10-P2c2 Gmo-Mir-10-P2d1 Gmo-Mir-10-P2d2 Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Hsa-Mir-10-P2b Hsa-Mir-10-P2c Hsa-Mir-10-P2d Isc-Mir-10-P2 Laf-Mir-10-P2b Laf-Mir-10-P2c Laf-Mir-10-P2d Lan-Mir-10-P2 Lch-Mir-10-P2b Lch-Mir-10-P2c Lch-Mir-10-P2d Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Loc-Mir-10-P2c Loc-Mir-10-P2d Lpo-Mir-10-P2o Lpo-Mir-10-P2p Lpo-Mir-10-P2q Mal-Mir-10-P2c2 Mal-Mir-10-P2d1 Mal-Mir-10-P2d2 Mdo-Mir-10-P2d Mgi-Mir-10-P2 Mml-Mir-10-P2b Mml-Mir-10-P2c Mml-Mir-10-P2d Mmr-Mir-10-P2b Mmr-Mir-10-P2c Mmr-Mir-10-P2d Mmu-Mir-10-P2b Mmu-Mir-10-P2c Mmu-Mir-10-P2d Mom-Mir-10-P2 Mun-Mir-10-P2b Mun-Mir-10-P2c Mun-Mir-10-P2d Neu-Mir-10-P2b Neu-Mir-10-P2c Neu-Mir-10-P2d Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2b Oan-Mir-10-P2c Oan-Mir-10-P2d Obi-Mir-10-P2 Ocu-Mir-10-P2b Ocu-Mir-10-P2c Ocu-Mir-10-P2d Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pab-Mir-10-P2b Pab-Mir-10-P2c Pab-Mir-10-P2d Pau-Mir-10-P2 Pbv-Mir-10-P2b Pbv-Mir-10-P2c Pbv-Mir-10-P2d Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pma-Mir-10-P2o1 Pma-Mir-10-P2o2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rno-Mir-10-P2b Rno-Mir-10-P2c Rno-Mir-10-P2d Rph-Mir-10-P2 Sha-Mir-10-P2b Sha-Mir-10-P2c Sha-Mir-10-P2d Sko-Mir-10-P2 Snu-Mir-10-P2 Spt-Mir-10-P2b Spt-Mir-10-P2c Spt-Mir-10-P2d Spu-Mir-10-P2m Spu-Mir-10-P2n Sto-Mir-10-P2b Sto-Mir-10-P2c Sto-Mir-10-P2d Tca-Mir-10-P2 Tgu-Mir-10-P2c Tgu-Mir-10-P2d Tni-Mir-10-P2d1 Tni-Mir-10-P2d2 Tur-Mir-10-P2 War-Mir-10-P2s War-Mir-10-P2t Xbo-Mir-10-P2 Xbo-Mir-10-P2-as Xla-Mir-10-P2b1 Xla-Mir-10-P2b2 Xla-Mir-10-P2c3 Xla-Mir-10-P2c4 Xtr-Mir-10-P2b Xtr-Mir-10-P2c

Node of Origin (locus)

Bilateria

Node of Origin (family)

Eumetazoa

Genome context
(BraLan2)

Sc0000265: 96703-96757 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P2-v2)

Mir-10-P2-v1 Sc0000265: 96702-96758 [+] Ensembl
Mir-10-P2-v2 Sc0000265: 96703-96757 [+] Ensembl
Let-7-P3 Sc0000265: 96979-97045 [+] Ensembl
Mir-10-P3 Sc0000265: 98469-98524 [+] Ensembl
Let-7-P4 Sc0000265: 98774-98840 [+] Ensembl

Variant

Bla-Mir-10-P2-v2

Seed

CCCGUAG

Precursor
(pre-Mir +30nt flank)

CCUGUCCUCAGAUAAAGCCGGCUGCCAUAAACCCGUAGAUCCGAACUUGUGUUGCUUCAGUUCACAAGCUCGUGUCUAUGGGUCUAUGUCAUCAGGGCAACAUCUGCAUGUGCAG

Get precursor sequence

Structure

        10          20        30        40        50       
CCUGUCCUCAGAUAAAG--| GGC  C    A         UC   A      UUGCU 
                   CC   UG CAUA ACCCGUAGA  CGA CUUGUG     \
                   GG   AC GUAU UGGGUAUCU  GCU GAACAC     U
GACGUGUACGUCUACAACG^ ACU  U    C         GU   C      UUGAC 
   110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Em	Em	Em	Em

Mature sequence

Bla-Mir-10-P2-v2_5p

mirBase accession

None

Sequence

0- ACCCGUAGAUCCGAACUUGUGU -22

Get sequence

Star sequence

Bla-Mir-10-P2-v2_3p*

mirBase accession

None

Sequence

34- CAAGCUCGUGUCUAUGGGUCU -55

Get sequence

Variant

Bla-Mir-10-P2-v1

Seed

ACCCGUA

Precursor
(pre-Mir +30nt flank)

UCCUGUCCUCAGAUAAAGCCGGCUGCCAUAAACCCGUAGAUCCGAACUUGUGUUGCUUCAGUUCACAAGCUCGUGUCUAUGGGUCUAUGUCAUCAGGGCAACAUCUGCAUGUGCAGU

Get precursor sequence

Structure

        10         20         30        40        50        
UCCUGUCCUCAGAUAAA-   GGC-| C    A         UC   A      UUGCU 
                  GCC    UG CAUA ACCCGUAGA  CGA CUUGUG     \
                  CGG    AC GUAU UGGGUAUCU  GCU GAACAC     U
UGACGUGUACGUCUACAA   GACU^ U    C         GU   C      UUGAC 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Em	Em	Em	Em

Mature sequence

Bla-Mir-10-P2-v1_5p

mirBase accession

None

Sequence

0- AACCCGUAGAUCCGAACUUGUGU -23

Get sequence

Star sequence

Bla-Mir-10-P2-v1_3p*

mirBase accession

None

Sequence

35- CAAGCUCGUGUCUAUGGGUCUA -57

Get sequence