| MirGeneDB ID | Bla-Mir-10-P9 |
|---|
| Family name |
MIR-10 (all species) |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
Bla-Mir-10-P1-v1
Bla-Mir-10-P2-v1
Bla-Mir-10-P3
Bla-Mir-10-P10
|
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| Orthologues |
Adi-Mir-10
Asp-Mir-10
Bfl-Mir-10-P9
Nve-Mir-10
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Eumetazoa
|
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Genome context
(BraLan2) |
Sc0000000: 2027630-2027689 [-]
Ensembl
|
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| Seed |
ACCCUGU |
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Precursor
(pre-Mir +30nt flank) |
UCUGUGACCCGCCAUGUUGUUCCCCAAGAUUACCCUGUAGAUCCGGACUUGUGAUCAGUAUAACAGCACAAAUCCGAUUUACAGGUUAGGCCUGGGCAACGCCAAUCUACAAAACGGUAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCUGUGACCCGCCAUGUU--| C AGA C C C AUCAGU
GUU CCCA UUA CCUGUAGAUC GGA UUGUG \
CAA GGGU GAU GGACAUUUAG CCU AACAC A
CAUGGCAAAACAUCUAACCG^ C CCG U - A GACAAU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | The 3' end of the 5p arm appears to be monoadenylated. |
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bla-Mir-10-P9_5p |
| mirBase accession | None |
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| Sequence |
0- UACCCUGUAGAUCCGGACUUGUG -23
Get sequence
|
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| Star sequence |
Bla-Mir-10-P9_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- CAAAUCCGAUUUACAGGUUAGG -60
Get sequence
|
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