MirGeneDB 3.0
80 Lottia gigantea microRNA genes
Sort by genome coordinates Motifs Tissue expression
- +
MirGeneDB ID ▼ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC To
Lgi-Novel-2-P2 None LGI-NOVEL-2 CCACUCA None None LOTGIsca_95 480768 480826 + L. gigantea L. gigantea No 1
Lgi-Novel-2-P1 None LGI-NOVEL-2 CCACUCA None None LOTGIsca_95 478396 478454 + L. gigantea L. gigantea No 1
Lgi-Novel-1 None LGI-NOVEL-1 CAAACAU None None LOTGIsca_115 803487 803546 - L. gigantea L. gigantea No 1
Lgi-Mir-12588 None MIR-12588 GUGAUAG None None LOTGIsca_13 796803 796862 - Gastropoda Gastropoda No 1 1
Lgi-Mir-2722 lgi-mir-2722 MIR-2722 AGGUGUU None MIMAT0013589 955868772_BGOB50479 333 388 - Mollusca Mollusca No 1 1
Lgi-Mir-2001 lgi-mir-2001 MIR-2001 UGUGACC MIMAT0009731 None LOTGIsca_150 486301 486357 - Bilateria Bilateria Unknown 1
Lgi-Mir-1994-P2 lgi-mir-1994b MIR-1994 GAGACAG None MIMAT0009725 LOTGIsca_4 5290321 5290377 + Mollusca Lophotrochozoa No 1
Lgi-Mir-1994-P1 lgi-mir-1994a MIR-1994 GAGACAG None MIMAT0009724 LOTGIsca_4 5290040 5290099 + Mollusca Lophotrochozoa Unknown 1
Lgi-Mir-1993 lgi-mir-1993 MIR-1993 AUUAUGC None MIMAT0009723 LOTGIsca_1 2120424 2120483 + Protostomia Protostomia No 1
Lgi-Mir-1992-P2 lgi-mir-1992 MIR-1992 CAGCAGU None MIMAT0009722 LOTGIsca_253 35945 36002 - L. gigantea Platytrochozoa No 1
Lgi-Mir-1992-P1 None MIR-1992 CAGCAGU None None LOTGIsca_253 36542 36604 - L. gigantea Platytrochozoa No 1
Lgi-Mir-1990-P2 lgi-mir-1990 MIR-1990 GGGACUA MIMAT0009732 None LOTGIsca_39 82025 82079 - Lophotrochozoa Lophotrochozoa No 1
Lgi-Mir-1989 lgi-mir-1989 MIR-1989 CAGCUGU MIMAT0009730 None LOTGIsca_2 5468355 5468415 - Platytrochozoa Platytrochozoa No 1
Lgi-Mir-1988 lgi-mir-1988 MIR-1988 GUGGUUU MIMAT0009729 None LOTGIsca_162 318652 318708 + Gastropoda Gastropoda No 1
Lgi-Mir-1986 lgi-mir-1986 MIR-1986 GGAUUUC None MIMAT0009728 LOTGIsca_39 81755 81811 - Lophotrochozoa Lophotrochozoa No 1
Lgi-Mir-1984-P2 lgi-mir-1985 MIR-1984 GCCAUUU MIMAT0009727 None LOTGIsca_4 4881330 4881387 + Gastropoda + Bivalvia + Scaphopoda Conchifera Unknown 1
Lgi-Mir-1984-P1 lgi-mir-1984 MIR-1984 GCCCUAU MIMAT0009726 None LOTGIsca_4 4879135 4879195 + Gastropoda + Bivalvia + Scaphopoda Conchifera Unknown 1 1
Lgi-Mir-1175 lgi-mir-1175 MIR-1175 GAGAUUC MIMAT0009602 MIMAT0009603 LOTGIsca_236 116361 116422 + Protostomia Protostomia No 1
Lgi-Mir-750 lgi-mir-750 MIR-750 CAGAUCU None MIMAT0009600 LOTGIsca_236 113228 113290 + Protostomia Protostomia No
Lgi-Mir-375 lgi-mir-375 MIR-375 UUGUUCG None MIMAT0009676 LOTGIsca_118 35413 35471 + Nephrozoa Nephrozoa No 1
Lgi-Mir-317 lgi-mir-317 MIR-317 GAACACA None MIMAT0009597 LOTGIsca_10 851891 851951 + Protostomia Protostomia No 1
Lgi-Mir-315 lgi-mir-315 MIR-315 UUUGAUU MIMAT0009596 None LOTGIsca_791 650 711 - Nephrozoa Nephrozoa Unknown 1
Lgi-Mir-281-P9 lgi-mir-281 MIR-281 GUCAUGG MIMAT0009594 MIMAT0009595 LOTGIsca_7 642928 642984 - L. gigantea Nephrozoa No 1
Lgi-Mir-281-P8 lgi-mir-281 MIR-281 GUCAUGG MIMAT0009594 MIMAT0009595 LOTGIsca_7 1082934 1082990 + L. gigantea Nephrozoa No 1
Lgi-Mir-279 lgi-mir-279 MIR-279 GACUAGA None MIMAT0009593 LOTGIsca_70 133228 133287 - Protostomia Protostomia No 1
Lgi-Mir-278 lgi-mir-278 MIR-278 CGGUGGG None MIMAT0009592 LOTGIsca_76 543736 543792 + Bilateria Bilateria No 1
Lgi-Mir-277 None MIR-277 AAAUGCA None None LOTGIsca_10 1145805 1145865 + Protostomia Protostomia No 1 1
Lgi-Mir-252-P2 lgi-mir-252a MIR-252 UAAGUAC MIMAT0009591 None LOTGIsca_150 483957 484016 - Bilateria Bilateria Unknown 1
Lgi-Mir-252-P1 lgi-mir-252b MIR-252 UAAGUAG MIMAT0009682 None LOTGIsca_150 486133 486191 - Bilateria Bilateria Unknown 1
Lgi-Mir-242-P2 lgi-mir-242a MIR-242 UGCGUAG MIMAT0009590 None LOTGIsca_16 1142666 1142720 - L. gigantea Nephrozoa Unknown 1
Lgi-Mir-242-P1 lgi-mir-242b MIR-242 UGCGUAG MIMAT0009681 None LOTGIsca_16 1142985 1143041 - L. gigantea Nephrozoa Unknown
Lgi-Mir-216-P2d lgi-mir-216a MIR-216 AAUCUCA MIMAT0009588 None LOTGIsca_22 807335 807401 + Lophotrochozoa Nephrozoa No 1
Lgi-Mir-216-P1 lgi-mir-216b MIR-216 AAUAUCA MIMAT0009589 None LOTGIsca_22 805723 805780 + Nephrozoa Nephrozoa Unknown 1
Lgi-Mir-210 None MIR-210 UGUGCGU None None LOTGIsca_145 563724 563779 - Bilateria Bilateria No 1
Lgi-Mir-193-P2 None MIR-193 AAUGCCC None None LOTGIsca_31 1573998 1574056 + Bilateria Bilateria Yes 1
Lgi-Mir-193-P1 lgi-mir-193 MIR-193 ACUGGCC None MIMAT0009587 LOTGIsca_31 1568891 1568950 + Bilateria Bilateria No
Lgi-Mir-190 V lgi-mir-190 MIR-190 GAUAUGU MIMAT0009586 None LOTGIsca_47 52951 53013 - Bilateria Bilateria 2 Unknown 1 1
Lgi-Mir-184-P6 None MIR-184 GGACGGA None None LOTGIsca_131 549297 549354 - L. gigantea Nephrozoa No 1
Lgi-Mir-184-P5 lgi-mir-184 MIR-184 GGACGGA None MIMAT0009585 LOTGIsca_131 549624 549681 - L. gigantea Nephrozoa No 1
Lgi-Mir-153 lgi-mir-153 MIR-153 UGCAUAG None MIMAT0009582 934768777_BGOB62773 183 240 + Bilateria Bilateria No 1 1
Lgi-Mir-137 lgi-mir-137 MIR-137 AUUGCUU None MIMAT0009581 LOTGIsca_112 765709 765768 + Bilateria Bilateria Unknown 1
Lgi-Mir-133 lgi-mir-133 MIR-133 UGGUCCC MIMAT0009579 MIMAT0009580 LOTGIsca_1 5190441 5190503 - Bilateria Bilateria No 1
Lgi-Mir-124-P13 None MIR-124 AAGGCAC None None LOTGIsca_15 2557525 2557581 + L. gigantea Bilateria No 1
Lgi-Mir-124-P12 lgi-mir-124 MIR-124 AAGGCAC None MIMAT0009578 LOTGIsca_15 2554528 2554585 + L. gigantea Bilateria No 1 1
Lgi-Mir-96-P3 lgi-mir-263b MIR-96 AUGGCAC MIMAT0009584 None LOTGIsca_71 756862 756922 + Bilateria Bilateria Unknown 1 1
Lgi-Mir-96-P2 lgi-mir-263a MIR-96 UUGGCAC MIMAT0009583 None LOTGIsca_71 757688 757746 + Bilateria Bilateria Unknown
Lgi-Mir-96-P1i lgi-mir-96b MIR-96 UUUGGCA MIMAT0009576 None LOTGIsca_112 69886 69944 + Mollusca Bilateria Unknown 1
Lgi-Mir-96-P1h lgi-mir-96a MIR-96 UUGGCAC MIMAT0009575 None LOTGIsca_31 795528 795586 + Mollusca Bilateria Unknown 1
Lgi-Mir-92-o31 lgi-mir-92 MIR-92 AUUGCAC None MIMAT0009574 LOTGIsca_47 43039 43096 - L. gigantea Bilateria No
Lgi-Mir-92-o30 lgi-mir-92 MIR-92 AUUGCAC None MIMAT0009574 LOTGIsca_47 43249 43304 - L. gigantea Bilateria No 1
Lgi-Mir-92-o29 V lgi-mir-92 MIR-92 AUUGCAC None MIMAT0009574 LOTGIsca_47 43373 43430 - L. gigantea Bilateria 2 No 1
Lgi-Mir-92-o28 lgi-mir-92 MIR-92 AUUGCAC None MIMAT0009574 LOTGIsca_47 46552 46607 - L. gigantea Bilateria No 1
Lgi-Mir-87-P1 lgi-mir-87 MIR-87 UGAGCAA None MIMAT0009573 LOTGIsca_160 256830 256887 + Protostomia Protostomia No 1
Lgi-Mir-76 lgi-mir-981 MIR-76 UCGUUGU None MIMAT0009601 LOTGIsca_42 846613 846673 + Nephrozoa Nephrozoa No 1
Lgi-Mir-71 lgi-mir-71 MIR-71 GAAAGAC MIMAT0009571 None LOTGIsca_2 4515804 4515862 - Nephrozoa Nephrozoa Unknown 1
Lgi-Mir-67 lgi-mir-67 MIR-67 CACAACC None MIMAT0009570 LOTGIsca_139 406874 406933 + Protostomia Protostomia Yes 1
Lgi-Mir-34 lgi-mir-34 MIR-34 GGCAGUG MIMAT0009569 None LOTGIsca_10 1151274 1151332 + Bilateria Bilateria Unknown 1 1
Lgi-Mir-33 lgi-mir-33 MIR-33 UGCAUUG MIMAT0009567 MIMAT0009568 LOTGIsca_111 788865 788923 + Bilateria Bilateria Unknown 1
Lgi-Mir-31 lgi-mir-31 MIR-31 GGCAAGA MIMAT0009566 None LOTGIsca_62 866087 866148 - Bilateria Bilateria Unknown 1
Lgi-Mir-29-P2 lgi-mir-29 MIR-29 AGCACCA None MIMAT0009565 LOTGIsca_4 3136225 3136282 + Bilateria Bilateria No 1
Lgi-Mir-22-P2 lgi-mir-745b MIR-22 AGCUGCC None MIMAT0009599 LOTGIsca_20 382169 382227 + Bilateria Bilateria No 1
Lgi-Mir-22-P1 lgi-mir-745a MIR-22 GCUGCCU None MIMAT0009598 LOTGIsca_20 381452 381510 + Bilateria Bilateria No 1
Lgi-Mir-12 lgi-mir-12 MIR-12 GAGUAUU MIMAT0009564 None LOTGIsca_22 809271 809328 + Protostomia Protostomia Unknown 1 1
Lgi-Mir-10-P6 lgi-mir-1991 MIR-10 UUACCCU MIMAT0009733 None LOTGIsca_12 2881809 2881870 - Neotrochozoa Eumetazoa No 1
Lgi-Mir-10-P5 None MIR-10 UACCCUG None None LOTGIsca_12 2736439 2736501 - Lophotrochozoa Eumetazoa Unknown 1 1
Lgi-Mir-10-P3 None MIR-10 CCCUGAG None None LOTGIsca_16 2784871 2784923 - Bilateria Eumetazoa Unknown 1
Lgi-Mir-10-P2 lgi-mir-100 MIR-10 ACCCGUA MIMAT0009577 None LOTGIsca_16 2793582 2793638 - Bilateria Eumetazoa Unknown 1
Lgi-Mir-10-P1 lgi-mir-10 MIR-10 ACCCUGU MIMAT0009563 None LOTGIsca_12 2577679 2577737 - Bilateria Eumetazoa Unknown 1
Lgi-Mir-9 lgi-mir-9 MIR-9 CUUUGGU MIMAT0009562 MIMAT0009572 LOTGIsca_14 1751428 1751489 + Bilateria Bilateria No 1
Lgi-Mir-8 lgi-mir-8 MIR-8 AAUACUG None MIMAT0009561 LOTGIsca_4 826439 826500 + Nephrozoa Nephrozoa No 1
Lgi-Mir-7 lgi-mir-7 MIR-7 GGAAGAC MIMAT0009560 None LOTGIsca_35 2110252 2110314 - Bilateria Bilateria Unknown 1
Lgi-Mir-2-P12e None MIR-2 AUCACAG None None LOTGIsca_2 4514299 4514357 - L. gigantea Protostomia No 1
Lgi-Mir-2-P12d None MIR-2 AUCACAG None None LOTGIsca_2 4514607 4514668 - L. gigantea Protostomia No 1
Lgi-Mir-2-P12c None MIR-2 AUCACAG None None LOTGIsca_2 4514962 4515022 - L. gigantea Protostomia No 1
Lgi-Mir-2-P12b None MIR-2 AUCACAG None None LOTGIsca_2 4515157 4515217 - L. gigantea Protostomia No 1
Lgi-Mir-2-P12a lgi-mir-2d MIR-2 AUCACAG None MIMAT0009559 LOTGIsca_2 4520083 4520141 + L. gigantea Protostomia No 1
Lgi-Mir-2-o50 lgi-mir-2c MIR-2 AUCACAG None MIMAT0009558 LOTGIsca_2 5780837 5780893 + L. gigantea Protostomia No 1
Lgi-Mir-1 lgi-mir-1 MIR-1 GGAAUGU None MIMAT0009557 LOTGIsca_1 5198467 5198526 - Bilateria Bilateria No 1
Lgi-Let-7 lgi-let-7 LET-7 GAGGUAG MIMAT0009604 None LOTGIsca_16 2791971 2792038 - Bilateria Bilateria No 1
Lgi-Bantam None BANTAM GAGAUCA None None LOTGIsca_212 233725 233783 + Protostomia Protostomia No

(red - mature/co-mature, blue - star)

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all

Download genome coordinates (GFF format)

Download count matrix