Mir-1994-P1

MirGeneDB ID

Lgi-Mir-1994-P1

Family name

MIR-1994 (all species)

Species

Owl limpet (Lottia gigantea)

MiRBase ID

lgi-mir-1994a

Paralogues

Lgi-Mir-1994-P2

Orthologues

Agr-Mir-1994-P1 Cte-Mir-1994 Dgr-Mir-1994 Eba-Mir-1994-P1 Efe-Mir-1994 Esc-Mir-1994-P1 Hru-Mir-1994-P1 Lan-Mir-1994-o1a Lan-Mir-1994-o1b Lhy-Mir-1994-P1 Llo-Mir-1994 Mgi-Mir-1994-P1 Mom-Mir-1994-P1 Npo-Mir-1994-P1 Obi-Mir-1994-P1 Ovu-Mir-1994-P1 Pve-Mir-1994-P1 Rph-Mir-1994-P1 War-Mir-1994-P1

Node of Origin (locus)

Mollusca

Node of Origin (family)

Lophotrochozoa

Genome context
(Lotgi1)

LOTGIsca_4: 5290040-5290099 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-1994-P1)

Mir-1994-P1 LOTGIsca_4: 5290040-5290099 [+] Ensembl
Mir-1994-P2 LOTGIsca_4: 5290321-5290377 [+] Ensembl

Seed

GAGACAG

Precursor
(pre-Mir +30nt flank)

AGUAAUACAGCAAACCCAAGUUUUCUCUCAGGGGAAGUCACUCUCGUCUCCAUGCCCCGAUAUCAGCAUGAGACAGUGUGUCCUCCCUUGAGUGAGAUGCUAUAAAGCCGCUAUGUUGCU

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Structure

        10         20         30        40        50        60
AGUAAUACAGCAAACCCA-   -|   U         AGU   U  C     C   CCCCG 
                   AGU UUUC CUCAGGGGA   CAC CU GUCUC AUG     A
                   UCG AGAG GAGUUCCCU   GUG GA CAGAG UAC     U
UCGUUGUAUCGCCGAAAUA   U^   U         CCU   U  -     -   GACUA 
.       110       100        90        80         70

Deep sequencing

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Comment

Although there are reads of the 3p arm they are short so it is unclear if this is a Group 1 or Group 2 miRNA.

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Lgi-Mir-1994-P1_5p* (predicted)

mirBase accession

None

Sequence

0- GGGGAAGUCACUCUCGUCUCCAUG -24

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Mature sequence

Lgi-Mir-1994-P1_3p

mirBase accession

MIMAT0009724

Sequence

38- UGAGACAGUGUGUCCUCCCUUG -60

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