Mir-1994-o1b

MirGeneDB ID

Lan-Mir-1994-o1b

Family name

MIR-1994 (all species)

Species

Lingula (Lingula anatina)

MiRBase ID

Paralogues

Lan-Mir-1994-o1a Lan-Mir-1994-o2a Lan-Mir-1994-o2b

Orthologues

Agr-Mir-1994-P1 Cte-Mir-1994 Dgr-Mir-1994 Eba-Mir-1994-P1 Efe-Mir-1994 Esc-Mir-1994-P1 Hru-Mir-1994-P1 Lgi-Mir-1994-P1 Lhy-Mir-1994-P1 Llo-Mir-1994 Mgi-Mir-1994-P1 Mom-Mir-1994-P1 Npo-Mir-1994-P1 Obi-Mir-1994-P1 Ovu-Mir-1994-P1 Pve-Mir-1994-P1 Rph-Mir-1994-P1 War-Mir-1994-P1

Node of Origin (locus)

L. anatina

Node of Origin (family)

Lophotrochozoa

Genome context
(LinAna_1.0)

LFEI01000901: 34810-34867 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-1994-o1b)

Mir-1994-o2b LFEI01000901: 32115-32186 [-] Ensembl
Mir-1994-o1b LFEI01000901: 34810-34867 [-] Ensembl

Seed

GAGACAG

Precursor
(pre-Mir +30nt flank)

CUGACAUAAUUAAAAGAGUUUGUACCGACGAGGGAGUACACACUUGCCUCAUGUUGUGUAAGAGGGUGAGACAGUGUGUCCUCCUUCAGCGUGACAACAGCGCCAUCUGGUAGAAUAA

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Structure

        10           20        30        40        50         
CUGACAUAAUUAAAAGA---|  U  AC  AC       U       U C     GUUGUG 
                    GUU GU  CG  GAGGGAG ACACACU G CUCAU      \
                    CAA CA  GC  CUUCCUC UGUGUGA C GAGUG      U
AAUAAGAUGGUCUACCGCGA^  -  GU  GA       C       - A     GGAGAA 
      110       100         90        80         70        60

Deep sequencing

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Comment

It is unclear how the two paralogues of Mir-1994 in the brachiopod and the phoronid relate to either one another or the two paralogues in molluscs and are hence considered orphans pending further data.

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

To	To

Star sequence

Lan-Mir-1994-o1b_5p* (predicted)

mirBase accession

None

Sequence

0- AGGGAGUACACACUUGCCUCAUG -23

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Mature sequence

Lan-Mir-1994-o1b_3p

mirBase accession

None

Sequence

36- UGAGACAGUGUGUCCUCCUUCA -58

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